Name: Georgenia subflava JCM 19765
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162606

Type strain:

Species: Georgenia subflava

Culture col. no.: JCM 19765, CGMCC 1.12782, LMG 28101, MCCC 1A09955

Strain history: G. Zhang Y32.

NCBI tax ID(s): 1622177 (species)

Section

Georgenia subflava JCM 19765 is a mesophilic, Gram-positive bacterium that was isolated from Deep-sea sediment of the western Pacific Ocean.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Bogoriellaceae*
	Genus	*Georgenia*
	Species	**Georgenia subflava**
	Full Scientific Name (LPSN)	Georgenia subflava Wang et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %95

[Ref.: #67770]

Observation

quinones: MK-8(H₄), MK-7(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment of the western Pacific Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP123395 (>99% sequence identity) for Georgenia subflava subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	290
Animal Samples	138
Plant Samples	10
Total Samples	461

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Georgenia subflava strain Y32 16S ribosomal RNA gene, partial sequence	KP123395	1486	ENA	1622177 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Georgenia subflava CGMCC 1.12782	GCA_009193155	contig	GenBank	1622177 tax ID
[Ref.: #67770]	Georgenia subflava JCM 19765	GCA_009362315	contig	GenBank	1622177 tax ID
[Ref.: #66792]	Georgenia subflava strain CGMCC 1.12782	1622177.3	wgs	PATRIC	1622177 tax ID	*
[Ref.: #66792]	Georgenia subflava strain JCM 19765	1622177.4	wgs	PATRIC	1622177 tax ID	*
[Ref.: #66792]	Georgenia subflava CGMCC 1.12782	2893003415	draft	JGI IMG/M	1622177 tax ID	*
[Ref.: #66792]	Georgenia subflava JCM 19765	2893025556	draft	JGI IMG/M	1622177 tax ID	*

[Ref.: #67770]

GC-content

71.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Georgenia subflava strain JCM 19765 PATRIC: 1622177.4
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Georgenia subflava strain CGMCC 1.12782 PATRIC: 1622177.3
[Ref.: #69480]	motile	yes	66.196	no
[Ref.: #69480]	gram-positive	yes	89.578	no
[Ref.: #69480]	anaerobic	no	98.727	no
[Ref.: #69480]	aerobic	yes	86.467	no
[Ref.: #69480]	halophile	no	85.331	no
[Ref.: #69480]	spore-forming	no	84.555	no
[Ref.: #69480]	thermophile	no	98.665	no
[Ref.: #69480]	glucose-util	yes	86.667	no
[Ref.: #69480]	flagellated	no	93.085	no
[Ref.: #69480]	glucose-ferment	no	78.382	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19765, CGMCC 1.12782, LMG 28101, MCCC 1A09955

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Georgenia subflava sp. nov., isolated from a deep-sea sediment.	Wang S, Xu X, Wang L, Jiao K, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000553	2015	*
Phylogeny	Georgenia faecalis sp. nov. isolated from the faeces of Tibetan antelope.	Wang X, Yang J, Huang Y, Wu X, Wang L, Han L, Li S, Li H, Fu X, Chen H, Zhu X	J Microbiol	10.1007/s12275-020-0060-1	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Georgenia subflava strain JCM 19765

Georgenia subflava strain CGMCC 1.12782

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