Name: Halarchaeum grantii JCM 19585
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162559

Type strain:

Species: Halarchaeum grantii

Culture col. no.: JCM 19585, KCTC 4142

Strain history: H. Minegishi; Toyo Univ., Japan; MH1-243-3.

NCBI tax ID(s): 1193105 (species)

Other strains from Halarchaeum grantii

H. grantii JCM 18422
H. grantii JCM 19586

Section

Halarchaeum grantii JCM 19585 is a thermophilic, Gram-negative archaeon that was isolated from Commercial salt sample made from seawater in Okinawa.

Gram-negative
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halarchaeum*
	Species	**Halarchaeum grantii**
	Full Scientific Name (LPSN)	Halarchaeum grantii Shimane et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.824

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	45 °C

[Ref.: #67770]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Commercial salt sample made from seawater in Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB698662 (>99% sequence identity) for Halarchaeum grantii subclade from Microbeatlas

Aquatic Samples	14
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	15

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halarchaeum grantii gene for 16S rRNA, partial sequence, strain: MH1-243-3	AB698662	1473	ENA	1193105 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halarchaeum grantii JCM 19585	GCA_014647455	scaffold	GenBank	1193105 tax ID	*

[Ref.: #67770]

GC-content

65.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halarchaeum grantii JCM 19585 NCBI: GCA_014647455.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halarchaeum grantii JCM 19585 NCBI: GCA_014647455.1
[Ref.: #69480]	flagellated	no	96.486	no
[Ref.: #69480]	gram-positive	no	95.997	no
[Ref.: #69480]	anaerobic	no	95.256	no
[Ref.: #69480]	aerobic	yes	86.941	no
[Ref.: #69480]	halophile	yes	86.359	no
[Ref.: #69480]	spore-forming	no	96.729	no
[Ref.: #69480]	glucose-util	yes	91.165	no
[Ref.: #69480]	thermophile	no	82.943	no
[Ref.: #69480]	motile	no	83.773	no
[Ref.: #69480]	glucose-ferment	no	65.548	no
[Ref.: #69480]	flagellated	no	96.486	no
[Ref.: #69480]	gram-positive	no	95.997	no
[Ref.: #69480]	anaerobic	no	95.256	no
[Ref.: #69480]	aerobic	yes	86.941	no
[Ref.: #69480]	halophile	yes	86.359	no
[Ref.: #69480]	spore-forming	no	96.729	no
[Ref.: #69480]	glucose-util	yes	91.165	no
[Ref.: #69480]	thermophile	no	82.943	no
[Ref.: #69480]	motile	no	83.773	no
[Ref.: #69480]	glucose-ferment	no	65.548	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19585, KCTC 4142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample.	Shimane Y, Minegishi H, Echigo A, Kamekura M, Itoh T, Ohkuma M, Tsubouchi T, Usui K, Maruyama T, Usami R, Hatada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000501	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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