Name: Hymenobacter wooponensis JCM 19491
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162531

Type strain:

Species: Hymenobacter wooponensis

Culture col. no.: JCM 19491, KCTC 32528

Strain history: C. N. Seong; Sunchon Natl. Univ., South Korea; WM78.

NCBI tax ID(s): 1525360 (species)

Section

Hymenobacter wooponensis JCM 19491 is a mesophilic, Gram-negative bacterium that was isolated from Freshwater from the inland wetland of Woopo.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter wooponensis**
	Full Scientific Name (LPSN)	Hymenobacter wooponensis Kang et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.888

[Ref.: #69480]	Motility	no Confidence in %90.382

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Freshwater from the inland wetland of Woopo
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter wooponensis strain WM78 16S ribosomal RNA gene, partial sequence	KF631221	1442	ENA	1525360 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter wooponensis JCM 19491	GCA_004745865	contig	GenBank	1525360 tax ID
[Ref.: #66792]	Hymenobacter wooponensis strain JCM 19491	1525360.3	wgs	PATRIC	1525360 tax ID	*
[Ref.: #66792]	Hymenobacter wooponensis JCM 19491	2893131009	draft	JGI IMG/M	1525360 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hymenobacter wooponensis strain JCM 19491 PATRIC: 1525360.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter wooponensis strain JCM 19491 PATRIC: 1525360.3
[Ref.: #69480]	motile	no	93.199	no
[Ref.: #69480]	gram-positive	no	96.718	no
[Ref.: #69480]	anaerobic	no	99.664	no
[Ref.: #69480]	aerobic	yes	92.162	no
[Ref.: #69480]	halophile	no	94.063	no
[Ref.: #69480]	spore-forming	no	92.978	no
[Ref.: #69480]	glucose-util	yes	81.269	no
[Ref.: #69480]	flagellated	no	95.269	no
[Ref.: #69480]	thermophile	no	98.074	no
[Ref.: #69480]	glucose-ferment	no	89.212	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19491, KCTC 32528

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter fodinae sp. nov. and Hymenobacter metallicola sp. nov., isolated from abandoned lead-zinc mine.	Feng GD, Zhang J, Chen W, Wang SN, Zhu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004313	2020	*
Phylogeny	Hymenobacter wooponensis sp. nov., isolated from wetland freshwater.	Kang JW, Lee JH, Baik KS, Lee SS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.000187	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Hymenobacter wooponensis strain JCM 19491

Hymenobacter wooponensis strain JCM 19491

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