Name: Halopseudomonas salina JCM 19469
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162512

Type strain:

Species: Halopseudomonas salina

Culture col. no.: JCM 19469, CGMCC 1.12482

Strain history: Z.-P. Liu XCD-X85.

NCBI tax ID(s): 1323744 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Halopseudomonas salina JCM 19469 is a mesophilic, Gram-negative bacterium that was isolated from Xiaochaidan Lake in Qaidam Basin.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Halopseudomonas*
	Species	**Halopseudomonas salina**
	Full Scientific Name (LPSN)	Halopseudomonas salina (Zhong et al. 2015) Rudra and Gupta 2021

	Synonym	Neopseudomonas salina
	Synonym	Pseudomonas salina

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %99.494
[Ref.: #125439]	Gram stain	negative Confidence in %99.8

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Xiaochaidan Lake in Qaidam Basin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC762324 (>99% sequence identity) for Pseudomonas salina from Microbeatlas

Aquatic Samples	2143
Soil Samples	257
Animal Samples	171
Plant Samples	35
Total Samples	2606

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas salina strain XCD-X85 16S ribosomal RNA gene, partial sequence	KC762324	1498	GenBank ENA	1323744 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halopseudomonas salina XCD-X85	GCA_008641105	scaffold	GenBank ENA	1323744 tax ID
[Ref.: #66792]	Halopseudomonas salina CGMCC 1.12482	GCA_014637955	scaffold	GenBank ENA	1323744 tax ID	*
[Ref.: #66792]	Pseudomonas salina strain CGMCC 1.12482	1323744.4	wgs	PATRIC	1323744 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas salina CGMCC 1.12482 NCBI: GCA_014637955.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.494	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.262	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	82.353	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.026	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.884	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	86.712	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halopseudomonas salina CGMCC 1.12482 NCBI: GCA_014637955
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	86.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative aerobe	62.7

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19469, CGMCC 1.12482

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Pseudomonas salina CGMCC 1.12482

Halopseudomonas salina CGMCC 1.12482

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