Halopseudomonas salina (CGMCC 1.12482, JCM 19469)

Name: Halopseudomonas salina (CGMCC 1.12482, JCM 19469)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162512

Type strain

Culture col. no. CGMCC 1.12482 JCM 19469

NCBI tax ID(s) 1323744

Special Collections JCM

History Z.-P. Liu XCD-X85.

Links

Halopseudomonas salina JCM 19469 is a bacterium that was isolated from Xiaochaidan Lake in Qaidam Basin.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28320

JCM 19469

@ref 20215

Last LPSN update 2026-02-09 11:39:25

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Halopseudomonas

Species Halopseudomonas salina

Full scientific name Halopseudomonas salina (Zhong et al. 2015) Rudra and Gupta 2021

Synonyms (2)

Neopseudomonas salina
Pseudomonas salina

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.494
125439	negative	99.8

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Xiaochaidan Lake in Qaidam Basin	Qinghai Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC762324 (>99% sequence identity) for Pseudomonas salina from Microbeatlas

Aquatic Samples	2143
Soil Samples	257
Animal Samples	171
Plant Samples	35
Total Samples	2606

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463795v1 assembly for Halopseudomonas salina CGMCC 1.12482	scaffold	GCA_014637955	1323744.4	8109713403	1323744	68.27
67770	ASM864110v1 assembly for Halopseudomonas salina XCD-X85	scaffold	GCA_008641105	1323744.3	2990145807	1323744	50.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas salina strain XCD-X85 16S ribosomal RNA gene, partial sequence	KC762324	1498		1323744

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halopseudomonas salina CGMCC 1.12482
NCBI: GCA_014637955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	86.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	62.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas salina CGMCC 1.12482
NCBI: GCA_014637955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	no
125438	anaerobic	anaerobicⓘ	no	96.26	no
125438	aerobic	aerobicⓘ	yes	82.35	no
125438	spore-forming	spore-formingⓘ	no	88.03	no
125438	thermophilic	thermophileⓘ	no	98.88	no
125438	flagellated	motile2+ⓘ	yes	86.71	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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