Name: Flavobacterium daemonense THG-DJ7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162505

Type strain:

Species: Flavobacterium daemonense

Strain Designation: THG-DJ7

Culture col. no.: JCM 19455, BCRC 81039, KACC 17651, CIP 111717

Strain history: CIP <- 2019, JCM <- T.-H. Yi: strain THG-DJ7

NCBI tax ID(s): 1393049 (species)

Section

Flavobacterium daemonense THG-DJ7 is a mesophilic, Gram-negative bacterium that was isolated from Soil of Daemo Mountain.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium daemonense**
	Full Scientific Name (LPSN)	Flavobacterium daemonense corrig. Ngo et al. 2015

Synonym

Flavobacterium daemonensis

Information on morphological and physiological properties Morphology

[Ref.: #118846]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #118846]	Cell shape	rod-shaped

[Ref.: #118846]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #118846]

Culture medium

CIP Medium 328

[Ref.: #118846]

Culture medium growth

[Ref.: #118846]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of Daemo Mountain
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #118846]	Sample type/isolated from	Environment, Mountain soil
[Ref.: #118846]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #118846]	Country	Republic of Korea
[Ref.: #118846]	Country ISO 3 Code	KOR
[Ref.: #118846]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF532125 (>99% sequence identity) for Flavobacterium daemonense subclade from Microbeatlas

Aquatic Samples	9
Soil Samples	3
Animal Samples	2
Plant Samples	1
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #118846]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium daemonense strain THG-DJ7 16S ribosomal RNA gene, partial sequence	KF532125	1401	ENA	1393049 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium daemonense JCM 19455	GCA_007341385	contig	GenBank	1393049 tax ID
[Ref.: #66792]	Flavobacterium daemonense strain JCM 19455	1393049.3	wgs	PATRIC	1393049 tax ID	*
[Ref.: #66792]	Flavobacterium daemonense JCM 19455	2925027207	draft	JGI IMG/M	1393049 tax ID	*

[Ref.: #67770]

GC-content

32.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium daemonense strain JCM 19455 PATRIC: 1393049.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium daemonense strain JCM 19455 PATRIC: 1393049.3
[Ref.: #69480]	motile	no	81.949	no
[Ref.: #69480]	gram-positive	no	98.552	no
[Ref.: #69480]	anaerobic	no	99.786	no
[Ref.: #69480]	halophile	no	96.919	no
[Ref.: #69480]	spore-forming	no	92.953	no
[Ref.: #69480]	glucose-util	yes	93.285	no
[Ref.: #69480]	thermophile	no	99.741	no
[Ref.: #69480]	aerobic	yes	92.266	no
[Ref.: #69480]	flagellated	no	93.466	no
[Ref.: #69480]	glucose-ferment	no	90.138	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19455, BCRC 81039, KACC 17651, CIP 111717

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium effusum sp. nov., isolated from a freshwater river.	Chen WM, Su CL, Kwon SW, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002944	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#118846 Collection of Institut Pasteur ; Curators of the CIP; CIP 111717
* These data were automatically processed and therefore are not curated

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Flavobacterium daemonense strain JCM 19455

Flavobacterium daemonense strain JCM 19455

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