Name: Lederbergia panacisoli JCM 19226
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162434

Type strain:

Species: Lederbergia panacisoli

Culture col. no.: JCM 19226, KACC 17503

Strain history: C.-J. Cha CJ32.

NCBI tax ID(s): 1255251 (species)

Section

Lederbergia panacisoli JCM 19226 is a mesophilic bacterium that was isolated from Soil of a ginseng field.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Lederbergia*
	Species	**Lederbergia panacisoli**
	Full Scientific Name (LPSN)	Lederbergia panacisoli (Choi and Cha 2014) Gupta et al. 2020

Synonym

Bacillus panacisoli

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Geumsan
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus panacisoli strain CJ32 from South Korea 16S ribosomal RNA gene, partial sequence	JQ806742	1461	ENA	1255251 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lederbergia panacisoli KACC 17503	GCA_024626525	scaffold	GenBank	1255251 tax ID	*

[Ref.: #67770]

GC-content

35.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lederbergia panacisoli KACC 17503 NCBI: GCA_024626525.1
[Ref.: #69480]	flagellated	yes	76.763	no
[Ref.: #69480]	gram-positive	yes	90.262	no
[Ref.: #69480]	anaerobic	no	99.016	no
[Ref.: #69480]	aerobic	yes	82.215	no
[Ref.: #69480]	halophile	yes	55.161	no
[Ref.: #69480]	spore-forming	yes	94.461	no
[Ref.: #69480]	glucose-ferment	no	89.854	no
[Ref.: #69480]	glucose-util	yes	85.589	no
[Ref.: #69480]	motile	yes	89.887	no
[Ref.: #69480]	thermophile	no	94.858	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19226, KACC 17503

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus panacisoli sp. nov., isolated from ginseng soil.	Choi JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.054320-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Lederbergia panacisoli KACC 17503

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