Jeotgalibaca dankookensis (KCCM 90229, JCM 19215)

Name: Jeotgalibaca dankookensis (KCCM 90229, JCM 19215)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162431

Type strain

Culture col. no. KCCM 90229 JCM 19215

NCBI tax ID(s) 708126

Special Collections JCM

Links

Jeotgalibaca dankookensis JCM 19215 is a mesophilic prokaryote that was isolated from Seujeot at Cheon-an Dankook University.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133514

JCM 19215

@ref 20215

Last LPSN update 2025-12-16 10:08:59

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Carnobacteriaceae

Genus Jeotgalibaca

Species Jeotgalibaca dankookensis

Full scientific name Jeotgalibaca dankookensis Lee et al. 2014

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
67770	Seujeot (Korean traditional food) at Cheon-an Dankook University	Seujeot	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC589215 (>99% sequence identity) for Jeotgalibaca dankookensis subclade from Microbeatlas

Aquatic Samples	430
Soil Samples	195
Animal Samples	4099
Plant Samples	55
Total Samples	4779

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score	BV-BRC accession
66792	ASM200540v1 assembly for Jeotgalibaca dankookensis EX-07	complete	GCA_002005405	2987115657	708126	97.17
66792	ASM119287v1 assembly for Jeotgalibaca dankookensis KCCM 90229	contig	GCA_001192875		708126	62.03	708126.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Jeotgalibaca dankookensis strain EX-07 16S ribosomal RNA gene, partial sequence	GU317945	1447		708126
67770	Jeotgalibaca dankookensis JCM 19215 gene for 16S rRNA, partial sequence	LC589215	1483		708126

GC content

@ref	GC-content (mol%)	Method
67770	39.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Jeotgalibaca dankookensis strain EX-07
PATRIC: 708126.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.20	no
125439	motility	BacteriaNetⓘ	yes	70.00	no
125439	gram_stain	BacteriaNetⓘ	variable	82.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Jeotgalibaca dankookensis strain EX-07
PATRIC: 708126.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.32	no
125438	anaerobic	anaerobicⓘ	no	83.06	no
125438	spore-forming	spore-formingⓘ	no	73.68	no
125438	aerobic	aerobicⓘ	no	87.96	no
125438	thermophilic	thermophileⓘ	no	92.47	yes
125438	flagellated	motile2+ⓘ	yes	57.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalibaca dankookensis gen. nov., sp. nov., a member of the family Carnobacteriaceae, isolated from seujeot (Korean traditional food).	Lee DG, Trujillo ME, Kang H, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijs.0.057059-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Jeotgalibaca dankookensis (KCCM 90229, JCM 19215)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002005405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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