Name: Jeotgalibaca dankookensis JCM 19215
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162431

Type strain:

Species: Jeotgalibaca dankookensis

Culture col. no.: JCM 19215, KCCM 90229

Strain history: D.-G. Lee EX-07.

NCBI tax ID(s): 708126 (species)

Section

Jeotgalibaca dankookensis JCM 19215 is a mesophilic bacterium that was isolated from Seujeot at Cheon-an Dankook University.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Jeotgalibaca*
	Species	**Jeotgalibaca dankookensis**
	Full Scientific Name (LPSN)	Jeotgalibaca dankookensis Lee et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seujeot (Korean traditional food) at Cheon-an Dankook University
[Ref.: #67770]	Host species	Seujeot
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC589215 (>99% sequence identity) for Jeotgalibaca dankookensis subclade from Microbeatlas

Aquatic Samples	430
Soil Samples	195
Animal Samples	4099
Plant Samples	55
Total Samples	4779

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jeotgalibaca dankookensis JCM 19215 gene for 16S rRNA, partial sequence	LC589215	1483	ENA	708126 tax ID
[Ref.: #67770]	Jeotgalibaca dankookensis strain EX-07 16S ribosomal RNA gene, partial sequence	GU317945	1447	ENA	708126 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jeotgalibaca dankookensis KCCM 90229	GCA_001192875	contig	GenBank	708126 tax ID	*
[Ref.: #66792]	Jeotgalibaca dankookensis strain EX-07	708126.8	complete	PATRIC	708126 tax ID	*
[Ref.: #66792]	Jeotgalibaca dankookensis strain EX-07	708126.10	plasmid	PATRIC	708126 tax ID	*
[Ref.: #66792]	Jeotgalibaca dankookensis strain KCCM 90229	708126.11	wgs	PATRIC	708126 tax ID	*

[Ref.: #67770]

GC-content

39.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalibaca dankookensis strain EX-07 PATRIC: 708126.8
[Ref.: #69480]	gram-positive	yes	86.699	no
[Ref.: #69480]	anaerobic	no	92.354	no
[Ref.: #69480]	halophile	yes	83.994	no
[Ref.: #69480]	spore-forming	no	88.051	no
[Ref.: #69480]	glucose-util	yes	89.891	no
[Ref.: #69480]	thermophile	no	99.467	yes
[Ref.: #69480]	flagellated	no	81.934	no
[Ref.: #69480]	motile	no	56.285	no
[Ref.: #69480]	aerobic	no	92.101	no
[Ref.: #69480]	glucose-ferment	yes	78.128	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19215, KCCM 90229

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalibaca dankookensis gen. nov., sp. nov., a member of the family Carnobacteriaceae, isolated from seujeot (Korean traditional food).	Lee DG, Trujillo ME, Kang H, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijs.0.057059-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Jeotgalibaca dankookensis strain EX-07

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