Name: Caldibacillus lycopersici JCM 19140
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162408

Type strain:

Species: Caldibacillus lycopersici

Culture col. no.: JCM 19140, BCRC 80623

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-Bw-5.

NCBI tax ID(s): 1325689 (species)

Section

Caldibacillus lycopersici JCM 19140 is a mesophilic bacterium that was isolated from Chopped tomato stems.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Caldibacillus*
	Species	**Caldibacillus lycopersici**
	Full Scientific Name (LPSN)	Caldibacillus lycopersici (Lin et al. 2015) Gupta et al. 2020

	Synonym	Bacillus lycopersici
	Synonym	Perspicuibacillus lycopersici

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Chopped tomato stems
[Ref.: #67770]	Geographic location (country and/or sea, region)	Taichung
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC849424 (>99% sequence identity) for Bacillus lycopersici subclade from Microbeatlas

Aquatic Samples	74
Soil Samples	240
Animal Samples	358
Plant Samples	42
Total Samples	714

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus lycopersici strain CC-Bw-5 16S ribosomal RNA gene, partial sequence	KC849424	1510	ENA	1325689 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldibacillus lycopersici JCM 19140	GCA_025660475	scaffold	GenBank	1325689 tax ID	*

[Ref.: #67770]

GC-content

35.6-38.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldibacillus lycopersici JCM 19140 NCBI: GCA_025660475.1
[Ref.: #69480]	motile	yes	92.507	no
[Ref.: #69480]	flagellated	yes	76.393	no
[Ref.: #69480]	gram-positive	yes	88.452	no
[Ref.: #69480]	anaerobic	no	98.645	no
[Ref.: #69480]	aerobic	yes	82.238	no
[Ref.: #69480]	halophile	yes	72.726	no
[Ref.: #69480]	spore-forming	yes	93.936	no
[Ref.: #69480]	glucose-ferment	no	82.318	no
[Ref.: #69480]	thermophile	no	95.721	yes
[Ref.: #69480]	glucose-util	yes	88.776	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19140, BCRC 80623

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus lycopersici sp. nov., isolated from a tomato plant (Solanum lycopersicum L.).	Lin SY, Hameed A, Liu YC, Wen CZ, Lai WA, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000223	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caldibacillus lycopersici in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF