Name: Thalassobacillus sp. JCM 19033
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162369

Type strain:

Species: Thalassobacillus sp.

Culture col. no.: JCM 19033

Strain history: T. Kudo C254.

NCBI tax ID(s): 1225341 (species)

Special Collections

Other strains from Thalassobacillus sp.

Section

When using BacDive for research please cite our paper

Thalassobacillus sp. JCM 19033 is a mesophilic bacterium that was isolated from Sea cucumber, at a depth of 236 m.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Thalassobacillus*
	Full Scientific Name (LPSN)	Thalassobacillus García et al. 2005

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

yes Confidence in %91.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sea cucumber, at a depth of 236 m
[Ref.: #67770]	Geographic location (country and/or sea, region)	coast of Fukue Island, Goto Islands
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thalassobacillus sp. C254 JCM 19033	GCA_001310615	contig	GenBank ENA	1225341 tax ID
[Ref.: #66792]	Thalassobacillus sp. C254 strain JCM 19033	1225341.4	wgs	PATRIC	1225341 tax ID	*
[Ref.: #66792]	Thalassobacillus sp. JCM 19033	2728369650	draft	JGI IMG/M	1225341 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thalassobacillus sp. C254 strain JCM 19033 PATRIC: 1225341.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	82.346	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.964	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	83.682	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.67	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	86.075	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	84.124	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thalassobacillus sp. C254 JCM 19033 NCBI: GCA_001310615
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	73.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	83.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	86.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	91.4

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19033

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Thalassobacillus sp. C254 strain JCM 19033

Thalassobacillus sp. C254 JCM 19033

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