Name: Sphingobacterium pakistanense JCM 18974
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162360

Type strain:

Species: Sphingobacterium pakistanense

Culture col. no.: JCM 18974, KCTC 23914, LMG 28524, NCCP 246

Strain history: I. Ahmed NCCP-246.

NCBI tax ID(s): 977983 (species)

Section

Sphingobacterium pakistanense JCM 18974 is a mesophilic bacterium that was isolated from Vigna mungo roots and rhizospheric soil sample collected from Research Farm area of Pir Mehr Ali Shah Arid Agriculture University.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium pakistanense**
	Full Scientific Name (LPSN)	Sphingobacterium pakistanense Ahmed et al. 2015

Synonym

"Sphingobacterium pakistanensis"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Vigna mungo roots and rhizospheric soil sample collected from Research Farm area of Pir Mehr Ali Shah Arid Agriculture University
[Ref.: #67770]	Host species	Vigna mungo
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rawalpindi
[Ref.: #67770]	Country	Pakistan
[Ref.: #67770]	Country ISO 3 Code	PAK
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB610802 (>99% sequence identity) for Sphingobacterium pakistanense subclade from Microbeatlas

Aquatic Samples	51
Soil Samples	199
Animal Samples	124
Plant Samples	67
Total Samples	441

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium pakistanense gene for 16S rRNA, partial sequence	AB610802	1460	ENA	977983 tax ID

[Ref.: #67770]

GC-content

39.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18974, KCTC 23914, LMG 28524, NCCP 246

Literature:

	Title	Authors	Journal	DOI	Year
Stress	Morphological and elemental evaluation of biochar through analytical techniques and its combined effect along with plant growth promoting rhizobacteria on Vicia faba L. under induced drought stress.	Nafees M, Ullah S, Ahmed I	Microsc Res Tech	10.1002/jemt.23854	2021	*
Phylogeny	Sphingobacterium pakistanensis sp. nov., a novel plant growth promoting rhizobacteria isolated from rhizosphere of Vigna mungo.	Ahmed I, Ehsan M, Sin Y, Paek J, Khalid N, Hayat R, Chang YH	Antonie Van Leeuwenhoek	10.1007/s10482-013-0077-0	2013	*
	Modulation of drought adversities in Vicia faba by the application of plant growth promoting rhizobacteria and biochar.	Nafees M, Ullah S, Ahmed I	Microsc Res Tech	10.1002/jemt.24047	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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