Hahella chejuensis (KCTC 2396, IMSNU 11157, JCM 18949)

Name: Hahella chejuensis (KCTC 2396, IMSNU 11157, JCM 18949)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162354

Type strain

Culture col. no. KCTC 2396 IMSNU 11157 JCM 18949

NCBI tax ID(s) 349521 158327

Special Collections JCM KCTC

History H. K. Lee 96CJ10356.

Links

Hahella chejuensis JCM 18949 is a bacterium that was isolated from Marine sediment from Marado.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88182

JCM 18949,KCTC 2396

@ref 20215

Last LPSN update 2026-02-09 11:39:23

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Hahellaceae

Genus Hahella

Species Hahella chejuensis

Full scientific name Hahella chejuensis Lee et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94
125438	negative	99.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	20

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Marine sediment from Marado	Cheju Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF195410 (>99% sequence identity) for Hahella from Microbeatlas

Aquatic Samples	4510
Soil Samples	1039
Animal Samples	1976
Plant Samples	336
Total Samples	7861

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1298v1 assembly for Hahella chejuensis KCTC 2396	complete	GCA_000012985	349521.8	637000128	349521	97.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Hahella chejuensis strain KCTC 2396 16S ribosomal RNA gene, partial sequence	AF195410	1422		349521

GC content

@ref	GC-content (mol%)	Method
67770	55	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hahella chejuensis KCTC 2396
NCBI: GCA_000012985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.40	no
125439	motility	BacteriaNetⓘ	yes	77.10	no
125439	gram_stain	BacteriaNetⓘ	negative	94.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	69.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hahella chejuensis KCTC 2396 KCTC 2396
NCBI: GCA_000012985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	90.91	no
125438	aerobic	aerobicⓘ	yes	77.82	no
125438	spore-forming	spore-formingⓘ	no	88.81	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	yes	86.06	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic insights into host-Endozoicomonadaceae cophylogeny.	Shao Z, Zhang J, Li J, Li J.	Microb Genom	10.1099/mgen.0.001384	2025
Metabolism	Enhanced Large-Scale Production of Hahella chejuensis-Derived Prodigiosin and Evaluation of Its Bioactivity.	Jeong Y, Kim HJ, Kim S, Park SY, Kim H, Jeong S, Lee SJ, Lee MS.	J Microbiol Biotechnol	10.4014/jmb.2109.09039	2021
	Prodigiosin: unveiling the crimson wonder - a comprehensive journey from diverse bioactivity to synthesis and yield enhancement.	Lu Y, Liu D, Jiang R, Li Z, Gao X.	Front Microbiol	10.3389/fmicb.2024.1412776	2024
Genetics	Discovery of New Secondary Metabolites from Marine Bacteria Hahella Based on an Omics Strategy.	He S, Li P, Wang J, Zhang Y, Lu H, Shi L, Huang T, Zhang W, Ding L, He S, Liu L.	Mar Drugs	10.3390/md20040269	2022
	Transcriptomic analysis of the antimicrobial activity of prodigiosin against Cutibacterium acnes.	Kim HJ, Lee MS, Jeong SK, Lee SJ.	Sci Rep	10.1038/s41598-023-44612-7	2023
Metabolism	Identification and Verification of the Prodigiosin Biosynthetic Gene Cluster (BGC) in Pseudoalteromonas rubra S4059.	Wang X, Isbrandt T, Christensen EO, Melchiorsen J, Larsen TO, Zhang SD, Gram L.	Microbiol Spectr	10.1128/spectrum.01171-21	2021
Pathogenicity	Effects of Hahella chejuensis-Derived Prodigiosin on UV-Induced ROS Production, Inflammation and Cytotoxicity in HaCaT Human Skin Keratinocytes.	Lee J, Kim HJ, Lee SJ, Lee MS.	J Microbiol Biotechnol	10.4014/jmb.2011.11024	2021
Genetics	Complete Genome Analysis of Undecylprodigiosin Pigment Biosynthesizing Marine Streptomyces Species Displaying Potential Bioactive Applications.	Ramesh C, Anwesh M, Vinithkumar NV, Kirubagaran R, Dufosse L.	Microorganisms	10.3390/microorganisms9112249	2021
	Study on the Anticancer Activity of Prodigiosin from Variants of Serratia Marcescens QBN VTCC 910026.	Nguyen SLT, Nguyen TC, Do TT, Vu TL, Nguyen TT, Do TT, Nguyen THT, Le TH, Trinh DK, Nguyen TAT.	Biomed Res Int	10.1155/2022/4053074	2022
	Hahella chejuensis is the etiological agent of a novel red egg disease in tilapia (Oreochromis spp.) hatcheries in Thailand	Senapin S, Dong HT, Meemetta W, Siriphongphaew A, Charoensapsri W, Santimanawong W, Turner WA, Rodkhum C, Withyachumnarnkul B, Vanichviriyakit R.	Aquaculture	10.1016/j.aquaculture.2015.12.013	2016
	Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and x-ray crystallography.	Chmelova K, Gao T, Polak M, Schenkmayerova A, Croll TI, Shaikh TR, Skarupova J, Chaloupkova R, Diederichs K, Read RJ, Damborsky J, Novacek J, Marek M.	Protein Sci	10.1002/pro.4751	2023
	Characterization of a novel bifunctional enzyme from buffalo rumen metagenome and its effect on in vitro ruminal fermentation and microbial community composition.	Meng Z, Ma J, Sun Z, Yang C, Leng J, Zhu W, Cheng Y.	Anim Nutr	10.1016/j.aninu.2023.01.004	2023
Genetics	Discovery and engineering of bifunctional enzymes for lignocellulose degradation: Metagenomic and computational approaches.	Goudarzi R, Jahanshahi DA, Kavousi A, Ariaeenejad S.	Biotechnol Rep (Amst)	10.1016/j.btre.2025.e00926	2025
Enzymology	Biosynthesis of the Tricyclic Aromatic Type II Polyketide Rishirilide: New Potential Third Ring Oxygenation after Three Cyclization Steps.	Alali A, Zhang L, Li J, Zuo C, Wassouf D, Yan X, Schwarzer P, Gunther S, Einsle O, Bechthold A.	Mol Biotechnol	10.1007/s12033-021-00314-x	2021
Pathogenicity	Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6.	Jouault A, Gobet A, Simon M, Portier E, Perennou M, Corre E, Gaillard F, Vallenet D, Michel G, Fleury Y, Bazire A, Dufour A.	Appl Environ Microbiol	10.1128/aem.00893-20	2020
	Aquatic Pseudomonads Inhibit Oomycete Plant Pathogens of Glycine max.	Wagner A, Norris S, Chatterjee P, Morris PF, Wildschutte H.	Front Microbiol	10.3389/fmicb.2018.01007	2018
	SspABCD-SspFGH Constitutes a New Type of DNA Phosphorothioate-Based Bacterial Defense System.	Wang S, Wan M, Huang R, Zhang Y, Xie Y, Wei Y, Ahmad M, Wu D, Hong Y, Deng Z, Chen S, Li Z, Wang L.	mBio	10.1128/mbio.00613-21	2021
Genetics	Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes.	Sait M, Kamneva OK, Fay DS, Kirienko NV, Polek J, Shirasu-Hiza MM, Ward NL.	Front Microbiol	10.3389/fmicb.2011.00211	2011
Metabolism	The genome analysis of Oleiphilus messinensis ME102 (DSM 13489^T) reveals backgrounds of its obligate alkane-devouring marine lifestyle.	Toshchakov SV, Korzhenkov AA, Chernikova TN, Ferrer M, Golyshina OV, Yakimov MM, Golyshin PN.	Mar Genomics	10.1016/j.margen.2017.07.005	2017
	Loss of Serine-Type D-Ala-D-Ala Carboxypeptidase DacA Enhances Prodigiosin Production in Serratia marcescens.	Pan X, Sun C, Tang M, Liu C, Zhang J, You J, Osire T, Sun Y, Zhao Y, Xu M, Yang T, Rao Z.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00367	2019
Metabolism	Genome-wide screening and identification of factors affecting the biosynthesis of prodigiosin by Hahella chejuensis, using Escherichia coli as a surrogate host.	Kwon SK, Park YK, Kim JF.	Appl Environ Microbiol	10.1128/aem.01468-09	2010
Metabolism	Exceptional production of both prodigiosin and cycloprodigiosin as major metabolic constituents by a novel marine bacterium, Zooshikella rubidus S1-1.	Lee JS, Kim YS, Park S, Kim J, Kang SJ, Lee MH, Ryu S, Choi JM, Oh TK, Yoon JH.	Appl Environ Microbiol	10.1128/aem.01986-10	2011
Metabolism	Draft genome sequence of Halomonas sp. strain HAL1, a moderately halophilic arsenite-oxidizing bacterium isolated from gold-mine soil.	Lin Y, Fan H, Hao X, Johnstone L, Hu Y, Wei G, Alwathnani HA, Wang G, Rensing C.	J Bacteriol	10.1128/jb.06359-11	2012
	An Indonesian Marine Bacterium, Pseudoalteromonas rubra, Produces Antimicrobial Prodiginine Pigments.	Setiyono E, Adhiwibawa MAS, Indrawati R, Prihastyanti MNU, Shioi Y, Brotosudarmo THP.	ACS Omega	10.1021/acsomega.9b04322	2020
	Ecological and Biotechnological Aspects of Pigmented Microbes: A Way Forward in Development of Food and Pharmaceutical Grade Pigments.	Chatragadda R, Dufosse L.	Microorganisms	10.3390/microorganisms9030637	2021
	Production and Potential Applications of Bioconversion of Chitin and Protein-Containing Fishery Byproducts into Prodigiosin: A Review.	Wang SL, Nguyen VB, Doan CT, Tran TN, Nguyen MT, Nguyen AD.	Molecules	10.3390/molecules25122744	2020
Metabolism	Domestication of Lambda Phage Genes into a Putative Third Type of Replicative Helicase Matchmaker.	Brezellec P, Petit MA, Pasek S, Vallet-Gely I, Possoz C, Ferat JL.	Genome Biol Evol	10.1093/gbe/evx111	2017
Metabolism	Structures of exoglucanase from Clostridium cellulovorans: cellotetraose binding and cleavage.	Tsai LC, Amiraslanov I, Chen HR, Chen YW, Lee HL, Liang PH, Liaw YC.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x15015915	2015
Metabolism	Production of prodigiosin using tannery fleshing and evaluating its pharmacological effects.	Sumathi C, MohanaPriya D, Swarnalatha S, Dinesh MG, Sekaran G.	ScientificWorldJournal	10.1155/2014/290327	2014
Enzymology	The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic effects on larvicidal activity.	Zhong W, Ding S, Guo H.	Genet Mol Biol	10.1590/s1415-475738320140320	2015
Metabolism	Characterization of the Pseudomonas aeruginosa metalloendopeptidase, Mep72, a member of the Vfr regulon.	Balyimez A, Colmer-Hamood JA, San Francisco M, Hamood AN.	BMC Microbiol	10.1186/1471-2180-13-269	2013
Metabolism	Transcriptional and functional studies of a Cd(II)/Pb(II)-responsive transcriptional regulator(CmtR) from Acidithiobacillus ferrooxidans ATCC 23270.	Zheng C, Li Y, Nie L, Qian L, Cai L, Liu J.	Curr Microbiol	10.1007/s00284-012-0117-4	2012
	Biological Potential and Mechanism of Prodigiosin from Serratia marcescens Subsp. lawsoniana in Human Choriocarcinoma and Prostate Cancer Cell Lines.	Li D, Liu J, Wang X, Kong D, Du W, Li H, Hse CY, Shupe T, Zhou D, Zhao K.	Int J Mol Sci	10.3390/ijms19113465	2018
Metabolism	A new type of DNA phosphorothioation-based antiviral system in archaea.	Xiong L, Liu S, Chen S, Xiao Y, Zhu B, Gao Y, Zhang Y, Chen B, Luo J, Deng Z, Chen X, Wang L, Chen S.	Nat Commun	10.1038/s41467-019-09390-9	2019
Genetics	Identification of novel glycosyl hydrolases with cellulolytic activity against crystalline cellulose from metagenomic libraries constructed from bacterial enrichment cultures.	Mori T, Kamei I, Hirai H, Kondo R.	Springerplus	10.1186/2193-1801-3-365	2014
Enzymology	Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: evidence for a new family of bacterial lipases.	Lee MH, Lee CH, Oh TK, Song JK, Yoon JH.	Appl Environ Microbiol	10.1128/aem.01157-06	2006
	Harnessing microbial wealth for lignocellulose biomass valorization through secretomics: a review.	Sethupathy S, Morales GM, Li Y, Wang Y, Jiang J, Sun J, Zhu D.	Biotechnol Biofuels	10.1186/s13068-021-02006-9	2021
Phylogeny	Genome mining reveals abiotic stress resistance genes in plant genomes acquired from microbes via HGT.	Li L, Peng S, Wang Z, Zhang T, Li H, Xiao Y, Li J, Liu Y, Yin H.	Front Plant Sci	10.3389/fpls.2022.1025122	2022
	Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.	Challacombe JF, Eichorst SA, Hauser L, Land M, Xie G, Kuske CR.	PLoS One	10.1371/journal.pone.0024882	2011
Genetics	Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages.	Lynch KH, Stothard P, Dennis JJ, Dennis JJ.	BMC Genomics	10.1186/1471-2164-13-223	2012
	Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.	Redondo-Nieto M, Barret M, Morrissey J, Germaine K, Martinez-Granero F, Barahona E, Navazo A, Sanchez-Contreras M, Moynihan JA, Muriel C, Dowling D, O'Gara F, Martin M, Rivilla R.	BMC Genomics	10.1186/1471-2164-14-54	2013
	Bioactive pigments from marine bacteria: applications and physiological roles.	Soliev AB, Hosokawa K, Enomoto K.	Evid Based Complement Alternat Med	10.1155/2011/670349	2011
Genetics	Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts.	Neave MJ, Michell CT, Apprill A, Voolstra CR.	Sci Rep	10.1038/srep40579	2017
Pathogenicity	A novel algicide: evidence of the effect of a fatty acid compound from the marine bacterium, Vibrio sp. BS02 on the harmful dinoflagellate, Alexandrium tamarense.	Li D, Zhang H, Fu L, An X, Zhang B, Li Y, Chen Z, Zheng W, Yi L, Zheng T.	PLoS One	10.1371/journal.pone.0091201	2014
	MetaLook: a 3D visualisation software for marine ecological genomics.	Lombardot T, Kottmann R, Giuliani G, de Bono A, Addor N, Glockner FO.	BMC Bioinformatics	10.1186/1471-2105-8-406	2007
	Structural properties of 2/2 hemoglobins: the group III protein from Helicobacter hepaticus.	Nothnagel HJ, Winer BY, Vuletich DA, Pond MP, Lecomte JT.	IUBMB Life	10.1002/iub.430	2011
	In silico characterization of pectate lyase protein sequences from different source organisms.	Dubey AK, Yadav S, Kumar M, Singh VK, Sarangi BK, Yadav D.	Enzyme Res	10.4061/2010/950230	2010
	Veillonella, Firmicutes: Microbes disguised as Gram negatives.	Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.	Stand Genomic Sci	10.4056/sigs.2981345	2013
Metabolism	The N-Acetylmuramic Acid 6-Phosphate Phosphatase MupP Completes the Pseudomonas Peptidoglycan Recycling Pathway Leading to Intrinsic Fosfomycin Resistance.	Borisova M, Gisin J, Mayer C.	mBio	10.1128/mbio.00092-17	2017
Genetics	Transposon Tn7 is widespread in diverse bacteria and forms genomic islands.	Parks AR, Peters JE.	J Bacteriol	10.1128/jb.01536-06	2007
Enzymology	The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin.	Boxma B, Ricard G, van Hoek AH, Severing E, Moon-van der Staay SY, van der Staay GW, van Alen TA, de Graaf RM, Cremers G, Kwantes M, McEwan NR, Newbold CJ, Jouany JP, Michalowski T, Pristas P, Huynen MA, Hackstein JH.	BMC Evol Biol	10.1186/1471-2148-7-230	2007
	Characterization of species-specific repeats in 613 prokaryotic species.	Koressaar T, Remm M.	DNA Res	10.1093/dnares/dss006	2012
Metabolism	A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella.	Xu T, Yao F, Zhou X, Deng Z, You D.	Nucleic Acids Res	10.1093/nar/gkq610	2010
	Tn7 elements: engendering diversity from chromosomes to episomes.	Parks AR, Peters JE.	Plasmid	10.1016/j.plasmid.2008.09.008	2009
Genetics	Comparative Genomics Reveals Evidence of Genome Reduction and High Extracellular Protein Degradation Potential in Kangiella.	Wang J, Lu Y, Nawaz MZ, Xu J.	Front Microbiol	10.3389/fmicb.2018.01224	2018
	dndDB: a database focused on phosphorothioation of the DNA backbone.	Ou HY, He X, Shao Y, Tai C, Rajakumar K, Deng Z.	PLoS One	10.1371/journal.pone.0005132	2009
Metabolism	Linking hydrothermal geochemistry to organismal physiology: physiological versatility in Riftia pachyptila from sedimented and basalt-hosted vents.	Robidart JC, Roque A, Song P, Girguis PR.	PLoS One	10.1371/journal.pone.0021692	2011
Metabolism	Sequence and structural analysis of the chitinase insertion domain reveals two conserved motifs involved in chitin-binding.	Li H, Greene LH.	PLoS One	10.1371/journal.pone.0008654	2010
Enzymology	Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.	Watson BJ, Zhang H, Longmire AG, Moon YH, Hutcheson SW.	J Bacteriol	10.1128/jb.00481-09	2009
	Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes.	Bohlin J, Skjerve E, Ussery DW.	BMC Genomics	10.1186/1471-2164-9-104	2008
Metabolism	The copper-inducible cin operon encodes an unusual methionine-rich azurin-like protein and a pre-Q0 reductase in Pseudomonas putida KT2440.	Quaranta D, McCarty R, Bandarian V, Rensing C.	J Bacteriol	10.1128/jb.00377-07	2007
Phylogeny	In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.	Lin FP, Coiera E, Lan R, Sintchenko V.	BMC Bioinformatics	10.1186/1471-2105-10-86	2009
Metabolism	Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.	Weiner RM, Taylor LE, Henrissat B, Hauser L, Land M, Coutinho PM, Rancurel C, Saunders EH, Longmire AG, Zhang H, Bayer EA, Gilbert HJ, Larimer F, Zhulin IB, Ekborg NA, Lamed R, Richardson PM, Borovok I, Hutcheson S.	PLoS Genet	10.1371/journal.pgen.1000087	2008
Enzymology	Structures of yeast glutathione-S-transferase Gtt2 reveal a new catalytic type of GST family.	Ma XX, Jiang YL, He YX, Bao R, Chen Y, Zhou CZ.	EMBO Rep	10.1038/embor.2009.216	2009
Genetics	Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes.	Pierneef R, Cronje L, Bezuidt O, Reva ON.	Database (Oxford)	10.1093/database/bav058	2015
Metabolism	Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria.	Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, Sanchez-Amat A, Kjelleberg S.	J Bacteriol	10.1128/jb.00549-08	2008
Metabolism	Turnerbactin, a novel triscatecholate siderophore from the shipworm endosymbiont Teredinibacter turnerae T7901.	Han AW, Sandy M, Fishman B, Trindade-Silva AE, Soares CA, Distel DL, Butler A, Haygood MG.	PLoS One	10.1371/journal.pone.0076151	2013
Metabolism	Phosphorus deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial mats.	Adams MM, Gomez-Garcia MR, Grossman AR, Bhaya D.	J Bacteriol	10.1128/jb.01011-08	2008
Genetics	The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).	Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL.	PLoS One	10.1371/journal.pone.0006085	2009
Metabolism	Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon.	Lasek R, Dziewit L, Bartosik D.	Extremophiles	10.1007/s00792-012-0435-2	2012
Metabolism	Novel metagenome-derived, cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase.	Lee MH, Oh KH, Kang CH, Kim JH, Oh TK, Ryu CM, Yoon JH.	Appl Environ Microbiol	10.1128/aem.00260-12	2012
Metabolism	Identification of genes and proteins necessary for catabolism of acyclic terpenes and leucine/isovalerate in Pseudomonas aeruginosa.	Forster-Fromme K, Hoschle B, Mack C, Bott M, Armbruster W, Jendrossek D.	Appl Environ Microbiol	10.1128/aem.00853-06	2006
	Characterization of a novel gene, wosA, regulating FlhDC expression in Proteus mirabilis.	Hatt JK, Rather PN.	J Bacteriol	10.1128/jb.01010-07	2008
Genetics	Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host.	Ding JY, Shiu JH, Chen WM, Chiang YR, Tang SL.	Front Microbiol	10.3389/fmicb.2016.00251	2016
Enzymology	Improved thermostability of Clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis.	Anbar M, Gul O, Lamed R, Sezerman UO, Bayer EA.	Appl Environ Microbiol	10.1128/aem.07985-11	2012
Enzymology	A bifunctional cellulase-xylanase of a new Chryseobacterium strain isolated from the dung of a straw-fed cattle.	Tan H, Miao R, Liu T, Yang L, Yang Y, Chen C, Lei J, Li Y, He J, Sun Q, Peng W, Gan B, Huang Z.	Microb Biotechnol	10.1111/1751-7915.13034	2018
	A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.	Poggio S, Abreu-Goodger C, Fabela S, Osorio A, Dreyfus G, Vinuesa P, Camarena L.	J Bacteriol	10.1128/jb.01681-06	2007
Metabolism	A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life.	Haas CE, Rodionov DA, Kropat J, Malasarn D, Merchant SS, de Crecy-Lagard V.	BMC Genomics	10.1186/1471-2164-10-470	2009
Genetics	Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.	Suzuki H, Sota M, Brown CJ, Top EM.	Nucleic Acids Res	10.1093/nar/gkn753	2008
Metabolism	Systematic prediction of control proteins and their DNA binding sites.	Sorokin V, Severinov K, Gelfand MS.	Nucleic Acids Res	10.1093/nar/gkn931	2009
	Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.	Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01420.x	2009
Metabolism	Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea.	Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, Merrick M, Matassi G.	J Bacteriol	10.1128/jb.01089-07	2007
	The dif/Xer recombination systems in proteobacteria.	Carnoy C, Roten CA.	PLoS One	10.1371/journal.pone.0006531	2009
Metabolism	Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.	Spaepen S, Versees W, Gocke D, Pohl M, Steyaert J, Vanderleyden J.	J Bacteriol	10.1128/jb.00830-07	2007
Phylogeny	Genomic analysis reveals versatile organisms for quorum quenching enzymes: acyl-homoserine lactone-acylase and -lactonase.	Kalia VC, Raju SC, Purohit HJ.	Open Microbiol J	10.2174/1874285801105010001	2011
Metabolism	Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships.	Cai L, Tan D, Aibaidula G, Dong XR, Chen JC, Tian WD, Chen GQ.	Microb Cell Fact	10.1186/1475-2859-10-88	2011
Metabolism	Identification of prophages in bacterial genomes by dinucleotide relative abundance difference.	Srividhya KV, Alaguraj V, Poornima G, Kumar D, Singh GP, Raghavenderan L, Katta AV, Mehta P, Krishnaswamy S.	PLoS One	10.1371/journal.pone.0001193	2007
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Metabolism	GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease.	Haft DH, Varghese N.	PLoS One	10.1371/journal.pone.0028886	2011
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Metabolism	Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens.	Wurch LL, Haley ST, Orchard ED, Gobler CJ, Dyhrman ST.	Environ Microbiol	10.1111/j.1462-2920.2010.02351.x	2011
Metabolism	Three putative cation/proton antiporters from the soda lake alkaliphile Alkalimonas amylolytica N10 complement an alkali-sensitive Escherichia coli mutant.	Wei Y, Liu J, Ma Y, Krulwich TA.	Microbiology (Reading)	10.1099/mic.0.2007/007450-0	2007
Metabolism	Novel toxin-antitoxin system composed of serine protease and AAA-ATPase homologues determines the high level of stability and incompatibility of the tumor-inducing plasmid pTiC58.	Yamamoto S, Kiyokawa K, Tanaka K, Moriguchi K, Suzuki K.	J Bacteriol	10.1128/jb.00124-09	2009
Metabolism	Single-residue changes in the C-terminal disulfide-bonded loop of the Pseudomonas aeruginosa type IV pilin influence pilus assembly and twitching motility.	Harvey H, Habash M, Aidoo F, Burrows LL.	J Bacteriol	10.1128/jb.00943-09	2009
Metabolism	Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices.	Antonioli P, Lampis S, Chesini I, Vallini G, Rinalducci S, Zolla L, Righetti PG.	Appl Environ Microbiol	10.1128/aem.00957-07	2007
Metabolism	Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB.	Sankaran B, Bonnett SA, Shah K, Gabriel S, Reddy R, Schimmel P, Rodionov DA, de Crecy-Lagard V, Helmann JD, Iwata-Reuyl D, Swairjo MA.	J Bacteriol	10.1128/jb.00287-09	2009
Metabolism	Distribution analysis of hydrogenases in surface waters of marine and freshwater environments.	Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C, Schwarz C, Gutekunst K, Vanselow KH, Schmitz R, LaRoche J, Schulz R, Appel J.	PLoS One	10.1371/journal.pone.0013846	2010
	The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome.	Mobberley JM, Authement RN, Segall AM, Paul JH.	J Virol	10.1128/jvi.00140-08	2008
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
Metabolism	Pivotal roles of the outer membrane polysaccharide export and polysaccharide copolymerase protein families in export of extracellular polysaccharides in gram-negative bacteria.	Cuthbertson L, Mainprize IL, Naismith JH, Whitfield C.	Microbiol Mol Biol Rev	10.1128/mmbr.00024-08	2009
Metabolism	Nitrate and periplasmic nitrate reductases.	Sparacino-Watkins C, Stolz JF, Basu P.	Chem Soc Rev	10.1039/c3cs60249d	2014
Genetics	Convergence of DNA methylation and phosphorothioation epigenetics in bacterial genomes.	Chen C, Wang L, Chen S, Wu X, Gu M, Chen X, Jiang S, Wang Y, Deng Z, Dedon PC, Chen S	Proc Natl Acad Sci U S A	10.1073/pnas.1702450114	2017
Metabolism	Increased incorporation of gaseous CO2 into succinate by Escherichia coli overexpressing carbonic anhydrase and phosphoenolpyruvate carboxylase genes.	Park S, Lee JU, Cho S, Kim H, Oh HB, Pack SP, Lee J	J Biotechnol	10.1016/j.jbiotec.2016.11.027	2016
Metabolism	Characterization of modular bifunctional processive endoglucanase Cel5 from Hahella chejuensis KCTC 2396.	Ghatge SS, Telke AA, Kang SH, Arulalapperumal V, Lee KW, Govindwar SP, Um Y, Oh DB, Shin HD, Kim SW	Appl Microbiol Biotechnol	10.1007/s00253-013-5446-0	2013
Metabolism	Statistical optimization of medium components for the production of prodigiosin by Hahella chejuensis KCTC 2396.	Kim SJ, Lee HK, Yim JH	J Microbiol Biotechnol	8139	2008
Pathogenicity	Red to red - the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms.	Kim D, Kim JF, Yim JH, Kwon SK, Lee CH, Lee HK	J Microbiol Biotechnol	8099	2008
Biotechnology	Mutant selection of Hahella chejuensis KCTC 2396 and statistical optimization of medium components for prodigiosin yield-up.	Kim SJ, Lee HK, Lee YK, Yim JH	J Microbiol	10.1007/s12275-008-0037-y	2008
	Biosynthesis of antibiotic prodiginines in the marine bacterium Hahella chejuensis KCTC 2396.	Kim D, Lee JS, Park YK, Kim JF, Jeong H, Oh TK, Kim BS, Lee CH	J Appl Microbiol	10.1111/j.1365-2672.2006.03172.x	2007
	Spartinivicinus ruber gen. nov., sp. nov., a Novel Marine Gammaproteobacterium Producing Heptylprodigiosin and Cycloheptylprodigiosin as Major Red Pigments.	Huang Z, Dong L, Lai Q, Liu J.	Front Microbiol	10.3389/fmicb.2020.02056	2020
Phylogeny	Allohahella marinimesophila gen. nov., sp. nov., isolated from seawater and reclassification of Hahella antarctica as Allohahella antarctica comb. nov.	Han Y, Zhao R, Yu T, Li Z, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001174	2016
Phylogeny	Hahella chejuensis gen. nov., sp. nov., an extracellular-polysaccharide-producing marine bacterium.	Lee HK, Chun J, Moon EY, Ko SH, Lee DS, Lee HS, Bae KS	Int J Syst Evol Microbiol	10.1099/00207713-51-2-661	2001

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hahella chejuensis (KCTC 2396, IMSNU 11157, JCM 18949)

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