Cite this strain

Nocardioides sp. (JCM 18899)

Name: Nocardioides sp. (JCM 18899)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162326

Type strain

Culture col. no. JCM 18899

NCBI tax ID(s) 285040

Special Collections JCM

History K. Satsuma AN3.

Links

JCM 18899 is a bacterium that was isolated from Riverbed sediment of Tonegawa River.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393565

JCM 18899

@ref 20215

Last LPSN update 2026-02-09 11:39:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Full scientific name Nocardioides Prauser 1976 (Approved Lists 1980)

Synonyms (2)

Pimelobacter
Marmoricola

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.7
125438		91.882

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.4

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Riverbed sediment of Tonegawa River	Ibaraki Pref.	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM131298v1 assembly for Nocardioides sp. AN3 JCM 18899	contig	GCA_001312985	285040.7	2734481925	285040

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nocardioides sp. AN3 gene for 16S rRNA, partial sequence	AB183711	1497		285040

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardioides sp. AN3 JCM 18899
NCBI: GCA_001312985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	63.30	no
125439	motility	BacteriaNetⓘ	no	85.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides sp. AN3 strain JCM 18899
PATRIC: 285040.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.07	no
125438	anaerobic	anaerobicⓘ	no	90.65	no
125438	spore-forming	spore-formingⓘ	no	66.52	no
125438	aerobic	aerobicⓘ	yes	82.66	no
125438	thermophilic	thermophileⓘ	no	88.23	no
125438	flagellated	motile2+ⓘ	no	91.88	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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