Name: Youngimonas vesicularis JCM 18819
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162304

Type strain:

Species: Youngimonas vesicularis

Culture col. no.: JCM 18819, BCRC 80549

Strain history: C.-C. Young CC-AMW-E.

NCBI tax ID(s): 1294297 (species)

Section

Youngimonas vesicularis JCM 18819 is a mesophilic bacterium that was isolated from Surface seawater off the coast at Kending.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Youngimonas*
	Species	**Youngimonas vesicularis**
	Full Scientific Name (LPSN)	Youngimonas vesicularis Hameed et al. 2014

Synonym

Thalassobius vesicularis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface seawater off the coast at Kending
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC169815 (>99% sequence identity) for Youngimonas vesicularis subclade from Microbeatlas

Aquatic Samples	302
Soil Samples	59
Animal Samples	7
Plant Samples	1
Total Samples	369

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Youngimonas vesicularis strain CC-AMW-E 16S ribosomal RNA gene, partial sequence	KC169815	1423	ENA	1294297 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Youngimonas vesicularis CC-AMW-E	GCA_004799325	contig	GenBank	1294297 tax ID

[Ref.: #67770]

GC-content

67.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Youngimonas vesicularis CC-AMW-E NCBI: GCA_004799325.1
[Ref.: #69480]	motile	no	55.11	no
[Ref.: #69480]	flagellated	no	83.782	no
[Ref.: #69480]	gram-positive	no	98.565	no
[Ref.: #69480]	anaerobic	no	98.75	no
[Ref.: #69480]	aerobic	yes	85.293	no
[Ref.: #69480]	halophile	yes	59.871	no
[Ref.: #69480]	spore-forming	no	97.122	no
[Ref.: #69480]	glucose-util	yes	52.218	no
[Ref.: #69480]	thermophile	no	95.763	yes
[Ref.: #69480]	glucose-ferment	no	92.424	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18819, BCRC 80549

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Youngimonas vesicularis gen. nov., sp. nov., of the family Rhodobacteraceae, isolated from surface seawater, reclassification of Donghicola xiamenensis Tan et al. 2009 as Pseudodonghicola xiamenensis gen. nov., comb. nov. and emended description of the genus Donghicola Yoon et al. 2007.	Hameed A, Shahina M, Lin SY, Nakayan P, Liu YC, Lai WA, Hsu YH	Int J Syst Evol Microbiol	10.1099/ijs.0.060962-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Youngimonas vesicularis CC-AMW-E

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