Name: Rhodococcus erythropolis JCM 18801
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162300

Type strain:

Species: Rhodococcus erythropolis

Culture col. no.: JCM 18801, KCTC 19793, NBRC 107577

Strain history: I. Ahmed and T. Fujiwara BTM4c.

NCBI tax ID(s): 1293590 (strain), 172041 (species)

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis JCM 18801 is a mesophilic, Gram-positive prokaryote that was isolated from Soil in an experimental field of the Yayoi Campus of the Univ. of Tokyo.

Gram-positive
mesophilic
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (LPSN)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.951

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in an experimental field of the Yayoi Campus of the Univ. of Tokyo
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB288063 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	6494
Soil Samples	7777
Animal Samples	11681
Plant Samples	2835
Total Samples	28787

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus baikonurensis gene for 16S ribosomal RNA, partial sequence, strain: KCTC 19793	AB288063	1502	ENA	172041 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus baikonurensis JCM 18801	GCA_001311605	contig	GenBank	1293590 tax ID	*
[Ref.: #66792]	Rhodococcus baikonurensis JCM 18801	1293590.3	wgs	PATRIC	1293590 tax ID	*
[Ref.: #66792]	Rhodococcus baikonurensis JCM 18801	2728369692	draft	JGI IMG/M	1293590 tax ID	*

[Ref.: #67770]

GC-content

50.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus baikonurensis JCM 18801 PATRIC: 1293590.3
[Ref.: #69481]	spore-forming	no	74	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus baikonurensis JCM 18801 PATRIC: 1293590.3
[Ref.: #69480]	motile	no	93.812	no
[Ref.: #69480]	gram-positive	yes	84.224	no
[Ref.: #69480]	anaerobic	no	99.452	no
[Ref.: #69480]	aerobic	yes	92.428	no
[Ref.: #69480]	halophile	no	89.68	no
[Ref.: #69480]	spore-forming	no	69.568	no
[Ref.: #69480]	thermophile	no	99.554	yes
[Ref.: #69480]	glucose-util	yes	88.11	no
[Ref.: #69480]	flagellated	no	98.601	no
[Ref.: #69480]	glucose-ferment	no	88.345	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18801, KCTC 19793, NBRC 107577

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodococcus baikonurensis JCM 18801

Rhodococcus baikonurensis JCM 18801

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