Name: Secundilactobacillus oryzae JCM 18673
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162279

Type strain:

Species: Secundilactobacillus oryzae

Culture col. no.: JCM 18673

Strain history: M. Tohno SG310.

NCBI tax ID(s): 1202668 (species)

Other strains from Secundilactobacillus oryzae

S. oryzae DSM 26518, JCM 18671, KCTC 21047, ... (type strain)
S. oryzae JCM 18672

Section

Secundilactobacillus oryzae JCM 18673 is a mesophilic bacterium that was isolated from Fermented rice grain .

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Secundilactobacillus*
	Species	**Secundilactobacillus oryzae**
	Full Scientific Name (LPSN)	Secundilactobacillus oryzae (Tohno et al. 2013) Zheng et al. 2020

Synonym

Lactobacillus oryzae

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Fermented rice grain (Oryza sativa L. subsp. japonica)
[Ref.: #67770]	Host species	Oryza sativa L. subsp. japonica
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ohtawara, Tochigi
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB731662 (>99% sequence identity) for Secundilactobacillus oryzae from Microbeatlas

Aquatic Samples	42
Soil Samples	32
Animal Samples	224
Plant Samples	32
Total Samples	330

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus oryzae gene for 16S ribosomal RNA, partial sequence, strain: SG310	AB731662	1488	ENA	1202668 tax ID

[Ref.: #67770]

GC-content

43.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18673

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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