Name: Hymenobacter swuensis JCM 18582
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162268

Type strain:

Species: Hymenobacter swuensis

Culture col. no.: JCM 18582, KCTC 32018

Strain history: M. K. Kim DY53.

NCBI tax ID(s): 1446467 (species)

Special Collections

JCM
KCTC

Section

Hymenobacter swuensis JCM 18582 is a bacterium that was isolated from Soil sample collected from a mountain of Deogyusan.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter swuensis**
	Full Scientific Name (LPSN)	Hymenobacter swuensis Lee et al. 2016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil sample collected from a mountain of Deogyusan
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeonbuk Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JX308618 (>99% sequence identity) for Hymenobacter from Microbeatlas

Aquatic Samples	66
Soil Samples	50
Animal Samples	184
Plant Samples	60
Total Samples	360

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter swuensis DY53 16S ribosomal RNA gene, partial sequence	JX308618	1402	GenBank ENA	1227739 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter swuensis DY53	GCA_000576555	complete	GenBank ENA	1227739 tax ID

[Ref.: #67770]	GC-content	59.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	59.67 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18582, KCTC 32018

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter metallilatus sp. nov., isolated from abandoned lead-zinc ore.	Feng GD, Zhang J, Zhang XJ, Wang SN, Xiong X, Zhang YL, Huang HR, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003450	2019	*
Phylogeny	Hymenobacter swuensis sp. nov., a gamma-radiation-resistant bacteria isolated from mountain soil.	Lee JJ, Srinivasan S, Lim S, Joe M, Lee SH, Kwon SA, Kwon YJ, Lee J, Choi JJ, Lee HM, Auh YK, Kim MK	Curr Microbiol	10.1007/s00284-013-0478-3	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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