Cite this strain

"Ochrovirga pacifica" (KCCM 90106, JCM 18327)

BacDive ID 162228

Type strain

Culture col. no. KCCM 90106 JCM 18327

NCBI tax ID(s) 1042376

Special Collections JCM

History JCM <-- C. Oh S85.

Links

"Ochrovirga pacifica" JCM 18327 is a bacterium that was isolated from Seaweed from coastal area .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 395383

JCM 18327

@ref 20215

Last LPSN update 2026-05-29 08:44:52

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus "Ochrovirga"

Species "Ochrovirga pacifica"

Full scientific name Ochrovirga pacifica Kwon et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.754
125438	negative	95.977
125438		91

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.077

Spore formation

@ref	Spore formation	Confidence
125438		93.333
125439		96.68

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67770	Seaweed from coastal area (7° 22' 19" N 151° 34' 50" E)	Chuuk State	Micronesia, Federated States of	FSM	Australia and Oceania	7.37194	151.581 7.37194/151.581

Taxonmaps

69479

Global distribution of 16S sequence JN596241 (>99% sequence identity) for Ochrovirga pacifica subclade from Microbeatlas

Aquatic Samples	964
Soil Samples	20
Animal Samples	47
Plant Samples	5
Total Samples	1036

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM22052v2 assembly for Ochrovirga pacifica S85	contig	GCA_000220525	1042376.8	2513237381	1042376	62.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Flavobacteriaceae bacterium S85 16S ribosomal RNA gene, partial sequence	JN596241	1401		1042376

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM22052v2 assembly for Ochrovirga pacifica S85
NCBI: GCA_000220525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.08	no
125439	gram_stain	BacteriaNetⓘ	negative	96.75	no
125439	motility	BacteriaNetⓘ	no	78.74	no
125439	spore_formation	BacteriaNetⓘ	no	96.68	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ochrovirga pacifica S85
NCBI: GCA_000220525.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.98	no
125438	anaerobic	anaerobicⓘ	no	91.01	no
125438	aerobic	aerobicⓘ	yes	74.05	no
125438	spore-forming	spore-formingⓘ	no	93.33	no
125438	thermophilic	thermophileⓘ	no	90.96	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ochrovirga pacifica gen. nov., sp. nov., a novel agar-lytic marine bacterium of the family Flavobacteriaceae isolated from a seaweed.	Kwon YK, Kim JH, Kim JJ, Yang SH, Ye BR, Heo SJ, Hyun JH, Qian ZJ, Park HS, Kang DH, Oh C	Curr Microbiol	10.1007/s00284-014-0598-4	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

"Ochrovirga pacifica" (KCCM 90106, JCM 18327)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000220525

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media