Name: Luteimonas granuli Gr-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162196

Type strain:

Species: Luteimonas granuli

Strain Designation: Gr-4

Culture col. no.: JCM 18203, KACC 16614

Strain history: W.-T. Im Gr-4.

NCBI tax ID(s): 1176533 (species)

Section

Luteimonas granuli Gr-4 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Granules used in the wastewater treatment in Daejeon.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	"Luteimonas granuli"
	Full Scientific Name (LPSN)	Luteimonas granuli Siddiqi et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68301]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #68301]	Cell shape	rod-shaped

[Ref.: #68301]	Motility	no

[Ref.: #68301]	Colony size	1-2 mm
[Ref.: #68301]	Colony color	light yellow
[Ref.: #68301]	Colony shape	circular
[Ref.: #68301]	Incubation period	2 days
[Ref.: #68301]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #68301]	growth	18-42 °C
[Ref.: #68301]	optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68301]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68301]			optimum	7
[Ref.: #68301]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68301]

Oxygen tolerance

aerobe

[Ref.: #68301]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68301]		NaCl		growth	0-3	%(w/v)
[Ref.: #68301]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68301]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #68301]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #68301]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #68301]	acetate ChEBI	-	assimilation
[Ref.: #68301]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #68301]	casein	-	hydrolysis
[Ref.: #68301]	D-glucose ChEBI	+	assimilation
[Ref.: #68301]	D-ribose ChEBI	-	assimilation
[Ref.: #68301]	D-sorbitol ChEBI	-	assimilation
[Ref.: #68301]	dna ChEBI	-	hydrolysis
[Ref.: #68301]	esculin ChEBI	+	hydrolysis
[Ref.: #68301]	gluconate ChEBI	-	assimilation
[Ref.: #68301]	glycogen ChEBI	+	assimilation
[Ref.: #68301]	itaconate ChEBI	-	assimilation
[Ref.: #68301]	L-arabinose ChEBI	-	assimilation
[Ref.: #68301]	L-histidine ChEBI	-	assimilation
[Ref.: #68301]	L-proline ChEBI	-	assimilation
[Ref.: #68301]	malate ChEBI	-	assimilation
[Ref.: #68301]	malonate ChEBI	-	assimilation
[Ref.: #68301]	melibiose ChEBI	-	assimilation
[Ref.: #68301]	N-acetyl-D-glucosamine ChEBI	-	assimilation
[Ref.: #68301]	nitrate ChEBI	+	reduction
[Ref.: #68301]	propionate ChEBI	-	assimilation
[Ref.: #68301]	salicin ChEBI	+	assimilation
[Ref.: #68301]	starch ChEBI	-	hydrolysis
[Ref.: #68301]	suberate ChEBI	-	assimilation
[Ref.: #68301]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68301]	acid phosphatase	+	3.1.3.2
[Ref.: #68301]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68301]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68301]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68301]	beta-galactosidase	+	3.2.1.23
[Ref.: #68301]	beta-glucosidase	-	3.2.1.21
[Ref.: #68301]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68301]	esterase (C 4)	+
[Ref.: #68301]	esterase Lipase (C 8)	+
[Ref.: #68301]	leucine arylamidase	+	3.4.11.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68301]

Fatty acid	Percentage
C15:0 iso	28.6
C16:0 iso	15.3
C17:1 iso w9c / C16:0 10-methyl	11.7
C16:1 w7c/C16:1 w6c	6.7
C11:0 iso	6.6
C17:0 iso	6
C11:0 iso 3-OH	5.6
C15:0 anteiso	5
C16:0	4.7
C14:0 iso	4.2
C14:0	1.2
C15:1 iso F	1.1
C12:0 iso 3OH	0.9
C16:0 3OH	0.9
C17:0 cyclo	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Granules used in the wastewater treatment in Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #68301]	Sample type/isolated from	granules from wastewater treatment plant
[Ref.: #68301]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #68301]	Country	Republic of Korea
[Ref.: #68301]	Country ISO 3 Code	KOR
[Ref.: #68301]	Continent	Asia
[Ref.: #68301]	Enrichment culture	R2A agar
[Ref.: #68301]	Enrichment culture duration	2 weeks
[Ref.: #68301]	Enrichment culture temperature	30 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ349045 (>99% sequence identity) for Luteimonas granuli from Microbeatlas

Aquatic Samples	69
Soil Samples	69
Animal Samples	82
Plant Samples	19
Total Samples	239

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68301]	Luteimonas sp. Gr-4 16S ribosomal RNA gene, partial sequence	JQ349045	1469	ENA	1176533 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteimonas granuli Gr-4	GCA_007795095	complete	GenBank	1176533 tax ID	*
[Ref.: #66792]	Luteimonas granuli Gr-4	2841064495	complete	JGI IMG/M	1176533 tax ID	*

[Ref.: #67770]

GC-content

70.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteimonas granuli Gr-4 NCBI: GCA_007795095.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteimonas granuli Gr-4 NCBI: GCA_007795095.1
[Ref.: #69480]	motile	yes	69.874	yes
[Ref.: #69480]	flagellated	no	85.091	no
[Ref.: #69480]	gram-positive	no	98.431	yes
[Ref.: #69480]	anaerobic	no	97.488	yes
[Ref.: #69480]	aerobic	yes	88.089	no
[Ref.: #69480]	halophile	no	95.314	no
[Ref.: #69480]	spore-forming	no	95.476	no
[Ref.: #69480]	glucose-util	yes	80.465	yes
[Ref.: #69480]	thermophile	no	95.489	no
[Ref.: #69480]	glucose-ferment	no	91.306	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18203, KACC 16614

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas granuli sp. nov., Isolated from Granules of the Wastewater Treatment Plant.	Siddiqi MZ, Yeon JM, Choi H, Lee JH, Kim SY, Wee JH, Im WT	Curr Microbiol	10.1007/s00284-020-02066-4	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68301

Muhammad Zubair Siddiqi, Jun Mo Yeon, Hanna Choi, Jae Hag Lee, Sang Yong Kim, Ji-Hyang Wee & Wan Taek Im: Luteimonas granuli sp. nov., Isolated from Granules of the Wastewater Treatment Plant. Curr Microbiol 77: 2002 - 2007 2020 ( DOI 10.1007/s00284-020-02066-4 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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