Name: Streptomyces lavendulae subsp. grasserius DSM 40385
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16217

Type strain:

Species: Streptomyces lavendulae subsp. grasserius

Culture col. no.: DSM 40385, ATCC 15875, ATCC 25457, CBS 690.69, IAM 2A-458, IFO 13045, ISP 5385, JCM 4056, JCM 4556, KCC S-0056, KCC S-0556, NBRC 13045, RIA 1237, BCRC 16226, CGMCC 4.1893, NRRL B-3072, NRRL B-3372, RIA 746, VKM Ac-1178

Strain history: KCC S-0056 <-- H. Yonehara 2A-458.

NCBI tax ID(s): 66421 (subspecies)

SI-ID 92838

ATCC 15875, ATCC 25457, IFO 13045, DSM 40385, JCM 4056, JCM 4556, NRRL B-3072, NRRL B-3372, VKM Ac-1178, CBS 690.69, NBRC 13045, BCRC 16226, CCRC 16226, CGMCC 4.1893

Section

Streptomyces lavendulae subsp. grasserius DSM 40385 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lavendulae subsp. grasserius**
	Full Scientific Name (LPSN)	Streptomyces lavendulae subsp. grasserius (Kuchaeva et al. 1961) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces lavendulae subsp. grasserius"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9513]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9513]

Culture medium growth

[Ref.: #9513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9513]

Culture medium composition

expand / minimize

[Ref.: #9513]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9513]

Culture medium growth

[Ref.: #9513]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9513]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9513]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9513]	Name of produced compound	grasseriomycin
[Ref.: #20216]	Name of produced compound	Grasseriomycin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		grasseriomycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9513]	Sample type/isolated from	soil
[Ref.: #9513]	Geographic location (country and/or sea, region)	Tokyo, Tama-graveyard
[Ref.: #9513]	Country	Japan
[Ref.: #9513]	Country ISO 3 Code	JPN
[Ref.: #9513]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tama-graveyard, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184885 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1680
Soil Samples	19336
Animal Samples	1702
Plant Samples	3681
Total Samples	26399

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9513]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces lavendulae subsp. grasserius strain DSM 40385 16S ribosomal RNA gene, partial sequence	AY999841	1420	ENA	66421 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. grasserius gene for 16S rRNA, partial sequence	AB122770	564	ENA	66421 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. grasserius gene for 16S ribosomal RNA, partial sequence, strain: JCM 4056	D43992	120	ENA	66421 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae gene for 16S rRNA, partial sequence, strain: NBRC 13045	AB184885	1476	ENA	58340 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lavendulae strain RIA746	1914.11	plasmid	PATRIC	1914 tax ID	*

Availability in culture collections External links

[Ref.: #9513]

Culture collection no.

DSM 40385, ATCC 15875, ATCC 25457, CBS 690.69, IAM 2A-458, IFO 13045, ISP 5385, JCM 4056, JCM 4556, KCC S-0056, KCC S-0556, NBRC 13045, RIA 1237, BCRC 16226, CGMCC 4.1893, NRRL B-3072, NRRL B-3372, RIA 746, VKM Ac-1178

[Ref.: #85278]

SI-ID 92838

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005078	2021	*

References

#9513

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40385

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85278

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92838.1 )

* These data were automatically processed and therefore are not curated

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