Name: Hyunsoonleella pacifica JCM 17860
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162123

Type strain:

Species: Hyunsoonleella pacifica

Culture col. no.: JCM 17860, CGMCC 1.11009

Strain history: X.-H. Zhang SW033.

NCBI tax ID(s): 1080224 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Hyunsoonleella pacifica JCM 17860 is a mesophilic bacterium that was isolated from Seawater of the South Pacific Gyre at station U1367 .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Hyunsoonleella*
	Species	**Hyunsoonleella pacifica**
	Full Scientific Name (LPSN)	Hyunsoonleella pacifica Gao et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %99.6
[Ref.: #125438]	Gram stain	negative Confidence in %97.95

[Ref.: #125438]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]	Ability of spore formation	no Confidence in %97.1
[Ref.: #125438]	Ability of spore formation	no Confidence in %93.312

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater of the South Pacific Gyre at station U1367 (26° 29' S 137° 56' W)
[Ref.: #67770]	Geographic location	-26.4833°/-137.9330°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JX501247 (>99% sequence identity) for Hyunsoonleella pacifica subclade from Microbeatlas

Aquatic Samples	125
Soil Samples	9
Animal Samples	1
Plant Samples	2
Total Samples	137

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hyunsoonleella pacifica strain SW033 16S ribosomal RNA gene, partial sequence	JX501247	1452	GenBank ENA	1080224 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hyunsoonleella pacifica SW033	GCA_004310335	scaffold	GenBank ENA	1080224 tax ID
[Ref.: #66792]	Hyunsoonleella pacifica CGMCC 1.11009	GCA_014636335	scaffold	GenBank ENA	1080224 tax ID	*
[Ref.: #66792]	Hyunsoonleella pacifica strain CGMCC 1.11009	1080224.7	wgs	PATRIC	1080224 tax ID	*

[Ref.: #67770]

GC-content

36.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hyunsoonleella pacifica CGMCC 1.11009 NCBI: GCA_014636335.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.95	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.541	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	78.535	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.312	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.281	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hyunsoonleella pacifica CGMCC 1.11009 NCBI: GCA_014636335
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	89.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	67.7
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.1

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17860, CGMCC 1.11009

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hyunsoonleella pacifica sp. nov., isolated from seawater of South Pacific Gyre.	Gao X, Zhang Z, Dai X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.000071	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Hyunsoonleella pacifica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Hyunsoonleella pacifica CGMCC 1.11009

Hyunsoonleella pacifica CGMCC 1.11009

Change proposal

Change proposal