Bacteroides propionicifaciens (DSM 19291, JCM 14649, CCUG 60909)

Name: Bacteroides propionicifaciens (DSM 19291, JCM 14649, CCUG 60909)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1621

Type strain

Strain Designation SV434

Culture col. no. DSM 19291 JCM 14649 CCUG 60909 SV434

NCBI tax ID(s) 1121099 392838

Special Collections DSMZ CCUG JCM Literature strains

Links

Bacteroides propionicifaciens SV434 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from methanogenic fermenter of cattle waste.

Gram-negative rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 323949

DSM 19291,JCM 14649

@ref 20215

Last LPSN update 2025-12-16 09:47:09

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides propionicifaciens

Full scientific name Bacteroides propionicifaciens Ueki et al. 2008

BacDive ID	Other strains from **Bacteroides propionicifaciens** (2)	Type strain
1620	B. propionicifaciens S562, DSM 19346
161508	B. propionicifaciens JCM 14650

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32432	negative	1.7 µm	0.75 µm	rod-shaped
125438					90.095
125438	negative				91.321
125439	negative				99.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15423	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
15423	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15423	positive	growth	30	mesophilic
32432	positive	growth	05-35
32432	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
32432	positive	optimum	7.9

Physiology and metabolism

Oxygen tolerance

15423

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
32432
125438		90.278
125439		99.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32432	NaCl	positive	growth	0-4 %
32432	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: MK-8, MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32432	22599 ChEBI	arabinose	+	carbon source
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
32432	17057 ChEBI	cellobiose	+	carbon source
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
32432	23652 ChEBI	dextrin	+	carbon source
32432	4853 ChEBI	esculin	+	hydrolysis
32432	28757 ChEBI	fructose	+	carbon source
32432	28260 ChEBI	galactose	+	carbon source
32432	17234 ChEBI	glucose	+	carbon source
32432	28087 ChEBI	glycogen	+	carbon source
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
32432	24996 ChEBI	lactate	+	carbon source
32432	17716 ChEBI	lactose	+	carbon source
32432	17306 ChEBI	maltose	+	carbon source
32432	37684 ChEBI	mannose	+	carbon source
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
32432	15361 ChEBI	pyruvate	+	carbon source
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	+		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
32432	catalase	+	1.11.1.6
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
15423	-	-	-	+	+	+	+	+	-	+/-	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Geographic location
15423	methanogenic fermenter of cattle waste		Japan	JPN	Asia
62492	Methanogenic fermenter of cattle waste	2007	Japan	JPN	Asia
67770	Rice-straw residue from a methanogenic reactor treating waste from cattle farms in Betsukai-machi		Japan	JPN	Asia	Hokkaido

Taxonmaps

69479

Global distribution of 16S sequence AB510706 (>99% sequence identity) for Bacteroides propionicifaciens subclade from Microbeatlas

Aquatic Samples	288
Soil Samples	269
Animal Samples	11553
Plant Samples	138
Total Samples	12248

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15423	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37540v1 assembly for Bacteroides propionicifaciens DSM 19291 = JCM 14649	contig	GCA_000375405	1121099.3	2517093002	1121099	64.89
67770	ASM61374v1 assembly for Bacteroides propionicifaciens DSM 19291 = JCM 14649	contig	GCA_000613745	1236495.3	2585427866	1121099	56.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bacteroides propionicifaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 14649	AB510706	1480		392838
15423	Bacteroides propionicifaciens gene for 16S ribosomal RNA, partial sequence, strain: SV434	AB264625	1428		392838

GC content

@ref	GC-content (mol%)	Method
15423	46.2-47.5	high performance liquid chromatography (HPLC)
32432	46.2-47.5
15423	38.0	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides propionicifaciens DSM 19291 = JCM 14649
NCBI: GCA_000375405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	67.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	no	72.10	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides propionicifaciens DSM 19291
PATRIC: 1121099.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.32	yes
125438	anaerobic	anaerobicⓘ	yes	85.89	yes
125438	spore-forming	spore-formingⓘ	no	90.28	no
125438	aerobic	aerobicⓘ	no	94.56	yes
125438	thermophilic	thermophileⓘ	no	92.24	yes
125438	flagellated	motile2+ⓘ	no	90.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Targeted prebiotic application of gluconic acid-containing oligosaccharides promotes Faecalibacterium growth through microbial cross-feeding networks.	Negishi H, Ichikawa A, Takahashi S, Kano H, Makino S.	ISME J	10.1093/ismejo/wraf027	2025
Pathogenicity	Environmental Impact of Tributyltin-Resistant Marine Bacteria in the Indigenous Microbial Population of Tributyltin-Polluted Surface Sediments.	Mimura H, Yagi M, Yoshida K.	Biocontrol Sci	10.4265/bio.22.89	2017
	Differential growth of bowel commensal Bacteroides species on plant xylans of differing structural complexity.	Centanni M, Hutchison JC, Carnachan SM, Daines AM, Kelly WJ, Tannock GW, Sims IM.	Carbohydr Polym	10.1016/j.carbpol.2016.11.017	2017
	In Vitro Influence of Specific Bacteroidales Strains on Gut and Liver Health Related to Metabolic Dysfunction-Associated Fatty Liver Disease.	Garcia-Morena D, Fernandez-Cantos MV, Escalera SL, Lok J, Iannone V, Cancellieri P, Maathuis W, Panagiotou G, Aranzamendi C, Aidy SE, Kolehmainen M, El-Nezami H, Wellejus A, Kuipers OP.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10219-1	2025
	Heterologous expression and antimicrobial potential of class II bacteriocins.	Elisa Heesemann Rosenkilde C, Olsen Lutzhoft D, Vazquez-Uribe R, Otto Alexander Sommer M.	Gut Microbes	10.1080/19490976.2024.2369338	2024
	Enhanced removal of chromium(vi) by Fe(iii)-reducing bacterium coated ZVI for wastewater treatment: batch and column experiments.	Zheng B, Ye Y, Hu B, Luo C, Zhu Y.	RSC Adv	10.1039/c9ra06516d	2019
	Gut microbiota in regulatory T cell generation and function: mechanisms and health implications.	Sharma A, Sharma G, Im SH.	Gut Microbes	10.1080/19490976.2025.2516702	2025
	GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance.	Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C, Pugin B.	Front Microbiol	10.3389/fmicb.2021.656895	2021
Genetics	Out of the Abyss: Genome and Metagenome Mining Reveals Unexpected Environmental Distribution of Abyssomicins.	Iglesias A, Latorre-Perez A, Stach JEM, Porcar M, Pascual J.	Front Microbiol	10.3389/fmicb.2020.00645	2020
Phylogeny	Distribution of different species of the Bacteroides fragilis group in individuals with Japanese cedar pollinosis.	Odamaki T, Xiao JZ, Sakamoto M, Kondo S, Yaeshima T, Iwatsuki K, Togashi H, Enomoto T, Benno Y.	Appl Environ Microbiol	10.1128/aem.01106-08	2008
Phylogeny	Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.	Odamaki T, Kato K, Sugahara H, Hashikura N, Takahashi S, Xiao JZ, Abe F, Osawa R.	BMC Microbiol	10.1186/s12866-016-0708-5	2016
	Moheibacter lacus sp. nov., Isolated from Freshwater Lake Sediment.	Liu Y, Chang YQ, Wang CN, Ye MQ, Wang MY, Du ZJ.	Curr Microbiol	10.1007/s00284-021-02465-1	2021
Metabolism	Steroidobacter flavus sp. nov., a microcystin-degrading Gammaproteobacterium isolated from soil.	Gong ZL, Zhang CF, Jin R, Zhang YQ.	Antonie Van Leeuwenhoek	10.1007/s10482-016-0706-5	2016
Phylogeny	Hymenobacter humi sp. nov., a bacterium isolated from soil.	Srinivasan S, Joo ES, Lee JJ, Kim MK.	Antonie Van Leeuwenhoek	10.1007/s10482-015-0436-0	2015
Phylogeny	Bacteroides propionicifaciens sp. nov., isolated from rice-straw residue in a methanogenic reactor treating waste from cattle farms.	Ueki A, Abe K, Kaku N, Watanabe K, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65486-0	2008

References

#15423	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19291
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32432	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28654 (see below)
#62492	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60909
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides propionicifaciens (DSM 19291, JCM 14649, CCUG 60909)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000375405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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