Name: Bacteroides propionicifaciens SV434
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1621

Type strain:

Species: Bacteroides propionicifaciens

Strain Designation: SV434

Culture col. no.: DSM 19291, JCM 14649, CCUG 60909

Strain history: A. Ueki SV434.

NCBI tax ID(s): 1121099 (strain), 392838 (species)

Other strains from Bacteroides propionicifaciens

B. propionicifaciens S562, DSM 19346
B. propionicifaciens JCM 14650

Section

Bacteroides propionicifaciens SV434 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from methanogenic fermenter of cattle waste.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides propionicifaciens**
	Full Scientific Name (LPSN)	Bacteroides propionicifaciens Ueki et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32432]	Gram stain	negative
[Ref.: #32432]	Cell length	1.7 µm
[Ref.: #32432]	Cell width	0.75 µm
[Ref.: #32432]	Cell shape	rod-shaped
[Ref.: #32432]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #69480]	Motility	no Confidence in %92.888

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15423]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15423]

Culture medium growth

[Ref.: #15423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15423]

Culture medium composition

expand / minimize

[Ref.: #15423]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #15423]

Culture medium growth

[Ref.: #15423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15423]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15423]	growth	30 °C
[Ref.: #32432]	growth	05-35 °C
[Ref.: #32432]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #15423]	Temperature range	mesophilic
[Ref.: #32432]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32432]			optimum	7.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15423]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.649

[Ref.: #32432]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32432]		NaCl		growth	0-4	%
[Ref.: #32432]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-8, MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32432]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #32432]	cellobiose ChEBI	+	carbon source
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #32432]	dextrin ChEBI	+	carbon source
[Ref.: #32432]	esculin ChEBI	+	hydrolysis
[Ref.: #32432]	fructose ChEBI	+	carbon source
[Ref.: #32432]	galactose ChEBI	+	carbon source
[Ref.: #32432]	glucose ChEBI	+	carbon source
[Ref.: #32432]	glycogen ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #32432]	lactate ChEBI	+	carbon source
[Ref.: #32432]	lactose ChEBI	+	carbon source
[Ref.: #32432]	maltose ChEBI	+	carbon source
[Ref.: #32432]	mannose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #32432]	pyruvate ChEBI	+	carbon source
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #32432]	catalase	+	1.11.1.6
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #15423]	10979	-	-	-	+	+	+	+	+	-	+/-	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15423]	Sample type/isolated from	methanogenic fermenter of cattle waste
[Ref.: #15423]	Country	Japan
[Ref.: #15423]	Country ISO 3 Code	JPN
[Ref.: #15423]	Continent	Asia

[Ref.: #62492]	Sample type/isolated from	Methanogenic fermenter of cattle waste
[Ref.: #62492]	Sampling date	2007
[Ref.: #62492]	Country	Japan
[Ref.: #62492]	Country ISO 3 Code	JPN
[Ref.: #62492]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rice-straw residue from a methanogenic reactor treating waste from cattle farms in Betsukai-machi
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB510706 (>99% sequence identity) for Bacteroides propionicifaciens subclade from Microbeatlas

Aquatic Samples	288
Soil Samples	269
Animal Samples	11553
Plant Samples	138
Total Samples	12248

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15423]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15423]	Bacteroides propionicifaciens gene for 16S ribosomal RNA, partial sequence, strain: SV434	AB264625	1428	ENA	392838 tax ID
[Ref.: #20218]	Bacteroides propionicifaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 14649	AB510706	1480	ENA	392838 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides propionicifaciens DSM 19291 = JCM 14649 DSM 19291	GCA_000375405	contig	GenBank	1121099 tax ID
[Ref.: #67770]	Bacteroides propionicifaciens DSM 19291 = JCM 14649 JCM 14649	GCA_000613745	contig	GenBank	1121099 tax ID
[Ref.: #66792]	Bacteroides propionicifaciens DSM 19291	1121099.3	wgs	PATRIC	1121099 tax ID	*
[Ref.: #66792]	Bacteroides propionicifaciens JCM 14649	1236495.3	wgs	PATRIC	1121099 tax ID	*
[Ref.: #66792]	Bacteroides propionicifaciens JCM 14649	2585427866	draft	JGI IMG/M	1121099 tax ID	*
[Ref.: #66792]	Bacteroides propionicifaciens DSM 19291	2517093002	draft	JGI IMG/M	1121099 tax ID	*

[Ref.: #15423]	GC-content	46.2-47.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32432]	GC-content	46.2-47.5 mol%
[Ref.: #15423]	GC-content	38.0 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides propionicifaciens JCM 14649 PATRIC: 1236495.3
[Ref.: #69480]	spore-forming	no	99.999	yes
[Ref.: #69480]	anaerobic	yes	98.649	yes
[Ref.: #69480]	gram-positive	no	99.989	no
[Ref.: #69480]	thermophile	no	99.896	yes
[Ref.: #69480]	motile	no	92.888	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides propionicifaciens JCM 14649 PATRIC: 1236495.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #15423]

Culture collection no.

DSM 19291, JCM 14649, CCUG 60909

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteroides propionicifaciens sp. nov., isolated from rice-straw residue in a methanogenic reactor treating waste from cattle farms.	Ueki A, Abe K, Kaku N, Watanabe K, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65486-0	2008	*

References

#15423

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19291

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32432

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28654 (see below)

#62492 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60909

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28654

IJSEM 346 2008 ( DOI 10.1099/ijs.0.65486-0 , PubMed 18218929 )

* These data were automatically processed and therefore are not curated

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