Name: Litorilituus sediminis JCM 17549
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162038

Type strain:

Species: Litorilituus sediminis

Culture col. no.: JCM 17549, CGMCC 1.10794

Strain history: X.-H. Zhang JYr2 <-- R. Zhao JYr2.

NCBI tax ID(s): 718192 (species)

Section

Litorilituus sediminis JCM 17549 is a mesophilic, Gram-negative bacterium that was isolated from Coastal sediment from an amphioxus breeding zone of Yellow Sea in Qingdao.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Litorilituus*
	Species	**Litorilituus sediminis**
	Full Scientific Name (LPSN)	Litorilituus sediminis Wang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #69480]	Motility	yes Confidence in %98.189

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.956
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal sediment from an amphioxus breeding zone of Yellow Sea in Qingdao
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GU391219 (>99% sequence identity) for Litorilituus sediminis subclade from Microbeatlas

Aquatic Samples	71
Soil Samples	13
Animal Samples	192
Plant Samples
Total Samples	276

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Litorilituus sediminis strain JYr2 16S ribosomal RNA gene, partial sequence	GU391219	1430	ENA	718192 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Litorilituus sediminis JCM 17549	GCA_004295665	complete	GenBank	718192 tax ID	*
[Ref.: #66792]	Litorilituus sediminis strain JCM 17549	718192.4	complete	PATRIC	718192 tax ID	*
[Ref.: #66792]	Litorilituus sediminis JCM 17549	2837225695	complete	JGI IMG/M	718192 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Litorilituus sediminis JCM 17549 NCBI: GCA_004295665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Litorilituus sediminis JCM 17549 NCBI: GCA_004295665.1
[Ref.: #69480]	motile	yes	88.666	no
[Ref.: #69480]	flagellated	yes	87.366	no
[Ref.: #69480]	gram-positive	no	99.047	no
[Ref.: #69480]	anaerobic	no	96.558	no
[Ref.: #69480]	aerobic	yes	68.038	no
[Ref.: #69480]	halophile	yes	58.992	no
[Ref.: #69480]	spore-forming	no	95.606	no
[Ref.: #69480]	thermophile	no	99.176	no
[Ref.: #69480]	glucose-util	yes	85.801	no
[Ref.: #69480]	glucose-ferment	no	71.188	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17549, CGMCC 1.10794

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.	Wang Y, Zhao R, Ji S, Li Z, Yu T, Li B, Shi X, Zhang XH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9967-4	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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