Name: Agathobacter rectalis JCM 17463
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162023

Type strain:

Species: Agathobacter rectalis

Culture col. no.: JCM 17463, ATCC 33656, CIP 105953, DSM 3377, KCTC 5835, LMG 30912, VPI 0990

Strain history: KCTC 5835 <-- CIP 105953 <-- ATCC 33656 <-- VPI 0990.

NCBI tax ID(s): 39491 (species)

Other strains from Agathobacter rectalis

A. rectalis A1-86, DSM 17629, NCIMB 14373
A. rectalis JCM 31336

Section

Agathobacter rectalis JCM 17463 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Agathobacter*
	Species	**Agathobacter rectalis**
	Full Scientific Name (PNU)	Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016

	Synonym	"Bacteroides* rectalis"*
	Synonym	Eubacterium rectale

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB626630 (>99% sequence identity) for [Eubacterium] rectale subclade from Microbeatlas

Aquatic Samples	1562
Soil Samples	291
Animal Samples	68496
Plant Samples	68
Total Samples	70417

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Eubacterium rectale gene for 16S ribosomal RNA, partial sequence	AB626630	1494	ENA	39491 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Eubacterium] rectale ATCC 33656 ATCC 33656	GCA_000020605	complete	GenBank	515619 tax ID	*
[Ref.: #66792]	[Eubacterium rectale] ATCC 33656	515619.32	complete	PATRIC	515619 tax ID	*
[Ref.: #66792]	Eubacterium rectale ATCC 33656	515619.6	complete	PATRIC	515619 tax ID	*
[Ref.: #66792]	Eubacterium rectale ATCC 33656	644736367	complete	JGI IMG/M	515619 tax ID	*
[Ref.: #67770]	[Eubacterium] rectale ATCC 33656 chromosome, complete genome	CP001107		ENA	515619 tax ID
[Ref.: #66792]	[Eubacterium] rectale VPI 0990	GCA_022453685	complete	GenBank	39491 tax ID	*

[Ref.: #67770]

GC-content

41.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17463, ATCC 33656, CIP 105953, DSM 3377, KCTC 5835, LMG 30912, VPI 0990

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion.	Duncan SH, Flint HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/004580-0	2008	*
Phylogeny	Characterization of an O-desmethylangolensin-producing bacterium isolated from human feces.	Yokoyama S, Niwa T, Osawa T, Suzuki T	Arch Microbiol	10.1007/s00203-009-0524-5	2009	*
Metabolism	Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides.	Riviere A, Gagnon M, Weckx S, Roy D, De Vuyst L	Appl Environ Microbiol	10.1128/AEM.02089-15	2015	*
Phylogeny	Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows.	Rosero JA, Killer J, Sechovcova H, Mrazek J, Benada O, Fliegerova K, Havlik J, Kopecny J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000788	2015	*
Metabolism	Inulin-type fructan degradation capacity of Clostridium cluster IV and XIVa butyrate-producing colon bacteria and their associated metabolic outcomes.	Moens F, De Vuyst L	Benef Microbes	10.3920/BM2016.0142	2017	*
Phylogeny	Opinions 100, 101 and 102.	Arahal DR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004390	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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