Name: Agathobacter rectalis JCM 17463
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162023

Type strain:

Species: Agathobacter rectalis

Culture col. no.: JCM 17463, ATCC 33656, CIP 105953, DSM 3377, KCTC 5835, LMG 30912, VPI 0990

Strain history: KCTC 5835 <-- CIP 105953 <-- ATCC 33656 <-- VPI 0990.

NCBI tax ID(s): 39491 (species)

SI-ID 40605

ATCC 33656, CIP 105953, DSM 3377, KCTC 5835

Other strains from Agathobacter rectalis

A. rectalis A1-86, DSM 17629, NCIMB 14373
A. rectalis JCM 31336

Section

Agathobacter rectalis JCM 17463 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Agathobacter*
	Species	**Agathobacter rectalis**
	Full Scientific Name (LPSN)	Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016

	Synonym	"Bacteroides* rectalis"*
	Synonym	Eubacterium rectale

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.713

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.979

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB626630 (>99% sequence identity) for [Eubacterium] rectale subclade from Microbeatlas

Aquatic Samples	1562
Soil Samples	291
Animal Samples	68496
Plant Samples	68
Total Samples	70417

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Eubacterium rectale gene for 16S ribosomal RNA, partial sequence	AB626630	1494	ENA	39491 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agathobacter rectalis ATCC 33656	GCA_000020605	complete	GenBank	515619 tax ID	*
[Ref.: #66792]	[Eubacterium rectale] ATCC 33656	515619.32	complete	PATRIC	515619 tax ID	*
[Ref.: #66792]	Eubacterium rectale ATCC 33656	515619.6	complete	PATRIC	515619 tax ID	*
[Ref.: #66792]	Eubacterium rectale ATCC 33656	644736367	complete	JGI IMG/M	515619 tax ID	*
[Ref.: #66792]	Agathobacter rectalis VPI 0990	GCA_022453685	complete	GenBank	39491 tax ID	*

[Ref.: #67770]

GC-content

41.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Eubacterium rectale ATCC 33656 PATRIC: 515619.6
[Ref.: #69481]	spore-forming	yes	56	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Eubacterium] rectale ATCC 33656 ATCC 33656 NCBI: GCA_000020605.1
[Ref.: #69480]	motile	yes	79.89	no
[Ref.: #69480]	flagellated	yes	56.409	no
[Ref.: #69480]	gram-positive	yes	85.808	no
[Ref.: #69480]	anaerobic	yes	99.999	no
[Ref.: #69480]	aerobic	no	99.332	no
[Ref.: #69480]	halophile	no	80.537	no
[Ref.: #69480]	spore-forming	yes	58.536	no
[Ref.: #69480]	glucose-util	yes	85.679	no
[Ref.: #69480]	thermophile	no	92.768	no
[Ref.: #69480]	glucose-ferment	yes	74.64	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17463, ATCC 33656, CIP 105953, DSM 3377, KCTC 5835, LMG 30912, VPI 0990

[Ref.: #113487]

SI-ID 40605

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Inulin-type fructan degradation capacity of Clostridium cluster IV and XIVa butyrate-producing colon bacteria and their associated metabolic outcomes.	Moens F, De Vuyst L	Benef Microbes	10.3920/BM2016.0142	2017	*
Phylogeny	Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows.	Rosero JA, Killer J, Sechovcova H, Mrazek J, Benada O, Fliegerova K, Havlik J, Kopecny J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000788	2015	*
Metabolism	Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides.	Riviere A, Gagnon M, Weckx S, Roy D, De Vuyst L	Appl Environ Microbiol	10.1128/AEM.02089-15	2015	*
Phylogeny	Characterization of an O-desmethylangolensin-producing bacterium isolated from human feces.	Yokoyama S, Niwa T, Osawa T, Suzuki T	Arch Microbiol	10.1007/s00203-009-0524-5	2009	*
Phylogeny	Opinions 100, 101 and 102.	Arahal DR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004390	2020	*
Phylogeny	Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion.	Duncan SH, Flint HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/004580-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40605.1 )

* These data were automatically processed and therefore are not curated

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Eubacterium rectale ATCC 33656

[Eubacterium] rectale ATCC 33656 ATCC 33656

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