Agathobacter rectalis JCM 17463 is a bacterium that was isolated from Human feces.
genome sequence 16S sequence Bacteria| @ref 20215 |
Last LPSN update
2026-05-29 08:44:49 |
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Lachnospiraceae |
| Genus Agathobacter |
| Species Agathobacter rectalis |
| Full scientific name Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016 |
| Synonyms (2) |
| BacDive ID | Other strains from Agathobacter rectalis (2) | Type strain |
|---|---|---|
| 5441 | A. rectalis A1-86, DSM 17629, NCIMB 14373 | |
| 164025 | A. rectalis JCM 31336 |
| @ref | Sample type | Host species | |
|---|---|---|---|
| 67770 | Human feces | Homo sapiens |
Global distribution of 16S sequence AB626630 (>99% sequence identity) for [Eubacterium] rectale subclade from Microbeatlas 
 Aquatic Samples |
1562 |
 Soil Samples |
291 |
 Animal Samples |
68496 |
 Plant Samples |
68 |
| Total Samples | 70417 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2245368v1 assembly for Agathobacter rectalis VPI 0990 | complete | GCA_022453685   | 39491.2717  | 8115828142  | 39491 | 98.69 |  |
| 66792 | ASM2060v1 assembly for Agathobacter rectalis ATCC 33656 | complete | GCA_000020605 | 515619.32 | 644736367 | 515619 | 97.02 | |
| 66792 | Eubacterium rectale ATCC 33656 | complete | 515619.6 | 515619 | 96.6 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Eubacterium rectale gene for 16S ribosomal RNA, partial sequence | AB626630 | 1494 | | 39491 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 41.5 | high performance liquid chromatography (HPLC) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Draft genome sequence of Agathobacter rectalis H10.1 isolated from the feces of a child with ulcerative colitis in remission. | Weerasingha S, Mack DR, Stintzi A. | Microbiol Resour Announc | 10.1128/mra.00920-25 | 2025 | | |
| Supplemental effects of acidifier and encapsulated butyrate solely and combined in high canola meal diets for nursery pigs. | McClellan KA, Fowler EC, Perez-Palencia JY, St-Pierre B, Weaver EM, Levesque CL, Koch K, Mueller S, Hong J. | J Anim Sci | 10.1093/jas/skaf111 | 2025 | | |
| Reduced butyrate-producing bacteria and altered metabolic pathways in the gut microbiome of immunoglobulin A nephropathy patients. | Popova A, Racenis K, Briviba M, Saksis R, Saulite M, Slisere B, Berga-Svitina E, Oleinika K, Saulite AJ, Seilis J, Kroica J, Cernevskis H, Petersons A, Klovins J, Lejnieks A, Kuzema V. | Sci Rep | 10.1038/s41598-025-13629-5 | 2025 | | |
| Iron-saturated bovine lactoferrin preserves microbiota diversity and healthy ageing-associated taxa in an in vitro colon model of elderly gut microbiota (Iron-saturated bovine lactoferrin impact on elderly gut microbiota). | Ruiz-Rico M, Ye H, O'Callaghan TF, O'Toole PW, McCarthy EK. | PLoS One | 10.1371/journal.pone.0332631 | 2025 | | |
| Effects of Prebiotics and a Synthetic Microbiome Consortium on the Composition and Metabolites of the Elderly Gut Microbiota In Vitro. | Ye H, Meehan D, Timmons S, O'Toole PW. | J Agric Food Chem | 10.1021/acs.jafc.5c00364 | 2025 | | |
| Survival and Impact on Microbial Diversity of Lacticaseibacillus paracasei DG in a Simulation of Human Intestinal Microbial Ecosystem. | Duysburgh C, Fiore W, Marzorati M. | Nutrients | 10.3390/nu17182952 | 2025 | | |
| Soy sauce-like seasoning enhances the growth of Agathobacter rectalis and the production of butyrate, propionate, and lactate. | Hayashi K, Uchida R, Horiba T, Kawaguchi T, Gomi K, Goto Y. | Biosci Microbiota Food Health | 10.12938/bmfh.2023-103 | 2024 | | |
| Probiotic Engraftment of Akkermansia muciniphila in an In Vitro Synthetic Microbial Community. | Berkhout MD, de Ram C, Boeren S, Plugge CM, Belzer C. | Microb Ecol | 10.1007/s00248-025-02605-1 | 2025 | | |
| Emerging probiotics: future therapeutics for human gut health. | Duncan SH, Sabater C. | FEMS Microbiol Ecol | 10.1093/femsec/fiaf077 | 2025 | | |
| Gut commensal Agathobacter rectalis alleviates microglia-mediated neuroinflammation against pathogenesis of Alzheimer disease. | Lv X, Zhan L, Ye T, Xie H, Chen Z, Lin Y, Cai X, Yang W, Liao X, Liu J, Sun J. | iScience | 10.1016/j.isci.2024.111116 | 2024 | | |
| Metabolism | Sulfoquinovose is exclusively metabolized by the gut microbiota and degraded differently in mice and humans. | Krasenbrink J, Hanson BT, Weiss AS, Borusak S, Tanabe TS, Lang M, Aichinger G, Hausmann B, Berry D, Richter A, Marko D, Mussmann M, Schleheck D, Stecher B, Loy A. | Microbiome | 10.1186/s40168-025-02175-x | 2025 | |
| Metabolite profiling of human-originated Lachnospiraceae at the strain level. | Abdugheni R, Wang WZ, Wang YJ, Du MX, Liu FL, Zhou N, Jiang CY, Wang CY, Wu L, Ma J, Liu C, Liu SJ. | Imeta | 10.1002/imt2.58 | 2022 | | |
| Rational Design of Live Biotherapeutic Products for the Prevention of Clostridioides difficile Infection. | Ke S, Villafuerte Galvez JA, Sun Z, Cao Y, Pollock NR, Chen X, Kelly CP, Liu YY. | J Infect Dis | 10.1093/infdis/jiae470 | 2025 | | |
| Genetics | Host genetic regulation of specific functional groups in the rumen microbiome of dairy cows: Implications for lactation trait. | Bai H, Lai Z, Zhang J, Zheng X, Zhang J, Jin W, Lin L, Mao S. | J Adv Res | 10.1016/j.jare.2024.11.012 | 2025 | |
| In vitro susceptibility of human gut microbes to potential food preservatives based on immobilized phenolic compounds. | Ruiz-Rico M, Renwick S, Allen-Vercoe E, Barat JM. | Food Chem | 10.1016/j.foodchem.2022.132136 | 2022 | | |
| Metabolism | Sulfoglycolysis sustains Eubacterium rectale in low-fiber diets. | Sharma M, Pudlo N, Jarva MA, Kaur A, John A, Burchill L, Lingford JP, Epa R, Abayakoon P, Scott NE, Turkenburg JP, Davies GJ, Martens EC, Goddard-Borger ED, Williams SJ. | J Biol Chem | 10.1016/j.jbc.2025.108320 | 2025 | |
| Pathogenicity | Exploring the Role of Microglial Cells in the Gut-Brain Axis Communication: A Systematic Review. | Ortiz-Samur NS, Vijaya AK, Burokas A, Mela V. | J Neurochem | 10.1111/jnc.70154 | 2025 | |
| Deciphering oxidative stress responses in human gut microbes and fecal microbiota: a cultivation-based approach. | Zund JN, Caflisch M, Mujezinovic D, Pluss S, Lacroix C, Pugin B. | FEMS Microbiol Ecol | 10.1093/femsec/fiaf054 | 2025 | | |
| Nasal Microbiota Profiling as a Predictive Secondary Tool for COVID-19 Diagnosis: The Critical Role of Taxonomic Resolution. | De Jaegher S, D'Aguanno M, Pinzauti D, Biazzo M. | Microorganisms | 10.3390/microorganisms13030501 | 2025 | | |
| Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae. | Lin X, Hu T, Wu Z, Li L, Wang Y, Wen D, Liu X, Li W, Liang H, Jin X, Xu X, Wang J, Yang H, Kristiansen K, Xiao L, Zou Y. | Imeta | 10.1002/imt2.174 | 2024 | | |
| Genetics | Study of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia. | Vazquez X, Lumbreras-Iglesias P, Rodicio MR, Fernandez J, Bernal T, Moreno AF, de Ugarriza PL, Fernandez-Verdugo A, Margolles A, Sabater C. | Sci Rep | 10.1038/s41598-024-56054-w | 2024 | |
| Protein expression, purification, crystallization and crystallographic studies of BPSL0741 from Burkholderia pseudomallei. | Fadhar NF, Nyanasegran PK, Firdaus-Raih M, Nathan S, Jonet MA, Ng CL. | Acta Crystallogr F Struct Biol Commun | 10.1107/s2053230x24008197 | 2024 | | |
| Integrated fecal macrogenomic and metabolomic analyses reveal celiac disease flora and metabolic profiles associated with Chinese populations. | Xue S, Shi T, Xie J, Liu W, Yao S, Li N, Liu H, Kong W, Gao F. | J Transl Med | 10.1186/s12967-025-06991-5 | 2025 | | |
| Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease. | Ha SM, Lee K, Kim GH, Hurych J, Cinek O, Shim JO. | iScience | 10.1016/j.isci.2024.111442 | 2024 | | |
| Analysis of microbiotas between traumatic and ulcerative wound: insights into challenges of current wounds managements. | Chen C, Wang J, Li Y, Fan Z, Dai Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1622552 | 2025 | | |
| Development and validation of PmMAD7 for efficient gene editing in Penaeus monodon. | Huang S, Zhou F, Jiang Z, Jiang S, Yang Q, Yang L, Huang J, Shi J, Ding Y, Li E, Li Y. | BMC Biotechnol | 10.1186/s12896-025-01060-7 | 2025 | | |
| stana: an R package for metagenotyping analysis and interactive application based on clinical data. | Sato N, Katayama K, Miyaoka D, Uematsu M, Saito A, Fujimoto K, Uematsu S, Imoto S. | NAR Genom Bioinform | 10.1093/nargab/lqae191 | 2025 | | |
| A Gnotobiotic Mouse Model with Divergent Equol-Producing Phenotypes: Potential for Determining Microbial-Driven Health Impacts of Soy Isoflavone Daidzein. | Leonard LM, Simpson AMR, Li S, Reddivari L, Cross TL. | Nutrients | 10.3390/nu16071079 | 2024 | | |
| Phylogeny | Investigating microbiota differences across chronic pancreatitis, influenced by lifestyle and genetic determinants. | Ahmed AYM, Rajai A, Fullwood C, Rivett DW, McLaughlin J, van der Gast C, Marsh R. | BMC Gastroenterol | 10.1186/s12876-025-04327-7 | 2025 | |
| Related differences in fecal bacteria of Chinese northern pregnant women of different ages: associations with maternal clinical indicators and neonatal outcomes. | Hu F, Liu G, Sun X, Su Y, Huang M. | Front Microbiol | 10.3389/fmicb.2025.1642516 | 2025 | | |
| Mucin-driven ecological interactions in an in vitro synthetic community of human gut microbes. | Berkhout MD, Ioannou A, de Ram C, Boeren S, Plugge CM, Belzer C. | Glycobiology | 10.1093/glycob/cwae085 | 2024 | | |
| Gut microbiome and metabolome profiles in renal allograft rejection from multiomics integration. | Dai X, Cao Y, Li L, Gao Y-X, Wang J-X, Liu Y-J, Ma T-T, Zheng J-M, Zhan P-P, Shen Z-Y. | mSystems | 10.1128/msystems.01626-24 | 2025 | | |
| Genetics | Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing. | Kogawa M, Nishikawa Y, Saeki T, Yoda T, Arikawa K, Takeyama H, Hosokawa M. | Front Microbiol | 10.3389/fmicb.2023.1133917 | 2023 | |
| Genetics | Microbiome, resistome, and potential transfer of antibiotic resistance genes in Chinese wet market under One Health sectors. | Yang J, Wang L, Liang Q, Wang Y, Yang X, Wu X, Pei X. | BMC Microbiol | 10.1186/s12866-025-04115-z | 2025 | |
| The gut microbiota modifies antibody durability and booster responses after SARS-CoV-2 vaccination. | Seong H, Yoon JG, Nham E, Choi YJ, Noh JY, Cheong HJ, Kim WJ, Kim EH, Kim C, Han YH, Lim S, Song JY. | J Transl Med | 10.1186/s12967-024-05637-2 | 2024 | | |
| High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation. | Slager J, Simpson HL, Gacesa R, Chen L, Tan IL, Gelderloos J, Maatman A, Wijmenga C, Zhernakova A, Fu J, Weersma RK, Gonera G, Jonkers IH, Withoff S. | Gut Microbes | 10.1080/19490976.2025.2489071 | 2025 | | |
| Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma. | Schulz C, Vilchez-Vargas R, Ocal E, Koch N, Puhr-Westerheide D, Burnell LF, Hirner-Eppeneder H, Benckert J, Pech M, Reimer P, Verslype C, Kuhl C, Tran A, Ricke J, Malfertheiner P, Alunni-Fabbroni M. | Gut Pathog | 10.1186/s13099-025-00727-y | 2025 | | |
| A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia. | Asare PT, Lee CH, Hurlimann V, Teo Y, Cuenod A, Akduman N, Gekeler C, Afrizal A, Corthesy M, Kohout C, Thomas V, de Wouters T, Greub G, Clavel T, Pamer EG, Egli A, Maier L, Vonaesch P. | Front Microbiol | 10.3389/fmicb.2023.1104707 | 2023 | | |
| Phylogeny | Should the Faecal Microbiota Composition Be Determined to Certify a Faecal Donor? | Morales C, Ballestero L, Del Rio P, Barbero-Herranz R, Olavarrieta L, Gomez-Artiguez L, Galeano J, Avendano-Ortiz J, Basterra J, Del Campo R. | Diagnostics (Basel) | 10.3390/diagnostics14232635 | 2024 | |
| Prebiotic Effect of Oxidized Hydroxypropyl Starch via In Vitro and In Vivo. | Zheng H, Xu Z, Fan Y, Han J, Zhou L, Li H, Pan X, Ma R, Liu C, Tian Y. | Foods | 10.3390/foods14132217 | 2025 | | |
| Genetics | Eubacterium rectale is a potential marker of altered gut microbiota in psoriasis and psoriatic arthritis. | Xiao Y, Wang Y, Tong B, Gu Y, Zhou X, Zhu N, Xu X, Yin X, Kou Y, Tan Y, Wang J, Li W. | Microbiol Spectr | 10.1128/spectrum.01154-23 | 2024 | |
| Phylogeny | Fecal microbiota transplantation influences microbiota without connection to symptom relief in irritable bowel syndrome patients. | Hartikainen AK, Jalanka J, Lahtinen P, Ponsero AJ, Mertsalmi T, Finnegan L, Crispie F, Cotter PD, Arkkila P, Satokari R. | NPJ Biofilms Microbiomes | 10.1038/s41522-024-00549-x | 2024 | |
| Members of Lachnospiraceae produce valerate and caproate in response to short-chain fatty acids. | Fitzgerald BG, Govind M, Firth IJ, Herold L, Froment J, Vancuren SJ, Allen-Vercoe E, Kimber MS, Sorbara MT. | Microbiome | 10.1186/s40168-025-02220-9 | 2025 | | |
| Genetics | Characterizations of the multi-kingdom gut microbiota in Chinese patients with gouty arthritis. | Chen C, Zhang Y, Yao X, Yan Q, Li S, Zhong Q, Liu Z, Tang F, Liu C, Li H, Zhu D, Lan W, Ling Y, Lu D, Xu H, Ning Q, Wang Y, Jiang Z, Zhang Q, Gu G, Sun L, Wang N, Wang G, Zhang A, Ullah H, Sun W, Ma W. | BMC Microbiol | 10.1186/s12866-023-03097-0 | 2023 | |
| Genetics | mKmer: an unbiased K-mer embedding of microbiomic single-microbe RNA sequencing data. | Mo F, Qian Q, Lu X, Zheng D, Cai W, Yao J, Chen H, Huang Y, Zhang X, Wu S, Shen Y, Bai Y, Wang Y, Jiang W, Fan L. | Brief Bioinform | 10.1093/bib/bbaf227 | 2025 | |
| A core human gut microbe, Mediterraneibacter gnavus, produces a broad-spectrum bacteriocin mediterrocin. | Mingolelli G, Raherisoanjato J, Trinh D, Gao Y, Henke M. | mBio | 10.1128/mbio.01523-25 | 2025 | | |
| Phylogeny | Analysis of gut microecological characteristics and differences between children with biliary atresia and non-biliary atresia in infantile cholestasis. | Liu Y, Zhang Y, Guo C, Li M, Wang Y, Zhang L. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1402329 | 2024 | |
| Metabolism | Coenzyme A metabolism: a key driver of gut microbiota dynamics and metabolic profiles. | Bottcher J, Sibon OCM, El Aidy S. | FEMS Microbiol Rev | 10.1093/femsre/fuaf051 | 2025 | |
| Genetics | GenomeFISH: genome-based fluorescence in situ hybridization for strain-level visualization of microbial communities. | Engelberts JP, Ye J, Parks DH, McMaster ES, McInnes AS, Woodcroft BJ, Volmer JG, McIlroy SJ, Tyson GW. | ISME J | 10.1093/ismejo/wraf138 | 2025 | |
| The Impact of Probiotic Supplementation on the Development of the Infant Gut Microbiota: An Exploratory Follow-Up of a Randomised Controlled Trial. | Coates N, John DA, Jordan S, Storey M, Thornton CA, Garaiova I, Wang D, Allen SJ, Michael DR, Plummer SF, Facey PD. | Microorganisms | 10.3390/microorganisms13050984 | 2025 | | |
| A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate. | Walters KA, Mohan G, Myers KS, Ingle AT, Donohue TJ, Noguera DR. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1173656 | 2023 | | |
| Maast: genotyping thousands of microbial strains efficiently. | Shi ZJ, Nayfach S, Pollard KS. | Genome Biol | 10.1186/s13059-023-03030-8 | 2023 | | |
| Synergistic Effects of Probiotics and Lifestyle Interventions on Intestinal Microbiota Composition and Clinical Outcomes in Obese Adults. | Florencio GP, Xavier AR, Natal ACC, Sadoyama LP, Pena GDG, Menezes RP, Sadoyama Leal G, Patrizzi LJ, Roder DVDB. | Metabolites | 10.3390/metabo15020070 | 2025 | | |
| Genetics | Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community. | Mori H, Kato T, Ozawa H, Sakamoto M, Murakami T, Taylor TD, Toyoda A, Ohkuma M, Kurokawa K, Ohno H. | DNA Res | 10.1093/dnares/dsad010 | 2023 | |
| Phylogeny | New Insights into Mucosa-Associated Microbiota in Paired Tumor and Non-Tumor Adjacent Mucosal Tissues in Colorectal Cancer Patients. | Gonzalez A, Fullaondo A, Navarro D, Rodriguez J, Tirnauca C, Odriozola A. | Cancers (Basel) | 10.3390/cancers16234008 | 2024 | |
| Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism. | Hu X, Xia K, Dai M, Han X, Yuan P, Liu J, Liu S, Jia F, Chen J, Jiang F, Yu J, Yang H, Wang J, Xu X, Jin X, Kristiansen K, Xiao L, Chen W, Han M, Duan S. | NPJ Biofilms Microbiomes | 10.1038/s41522-023-00386-4 | 2023 | | |
| Genetics | Expanded gut microbial genomes from Chinese populations reveal population-specific genomic features related to human physiological traits. | Dong Q, Ma B, Zhou X, Huang P, Gao M, Yang S, Jiao Y, Zhou Y, Shi Z, Deng Q, Hua D, Wang X, Liu L, Zhang C, Zhang C, Kong M, He C, Wu T, Zou H, Shi J, Sheng Y, Wang Y, GMR Consortium, Tang L, Hu S, Zhong H, Sun W, Chen W, Zhai Q, Kong X, Zheng Y, Chen L. | Genome Med | 10.1186/s13073-025-01566-x | 2025 | |
| Beneficial Effects of Traditional Fermented Soybean Sauce (Kanjang) on Memory Function, Body Water, and Glucose Metabolism: Roles of Gut Microbiota and Neuroinflammation. | Yue Y, Yang HJ, Li C, Ryu MS, Seo JW, Jeong DY, Park S. | Nutrients | 10.3390/nu17101617 | 2025 | | |
| Genetics | Anti-diabetic effect of dicaffeoylquinic acids is associated with the modulation of gut microbiota and bile acid metabolism. | Huang Y, Xu W, Dong W, Chen G, Sun Y, Zeng X. | J Adv Res | 10.1016/j.jare.2024.06.027 | 2025 | |
| Distinct in vitro utilization and degradation of porcine gastric mucin glycans by human intestinal bacteria. | de Ram C, Berkhout MD, O Pandeirada C, Vincken JP, Hooiveld GJEJ, Belzer C, Schols HA. | FEMS Microbiol Ecol | 10.1093/femsec/fiaf066 | 2025 | | |
| Genetics | MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome. | Zheng B, Xu J, Zhang Y, Qin J, Yuan D, Fan T, Wu W, Chen Y, Jiang Y. | Heliyon | 10.1016/j.heliyon.2024.e37422 | 2024 | |
| Genetics | HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data. | Hiseni P, Rudi K, Wilson RC, Hegge FT, Snipen L. | Microbiome | 10.1186/s40168-021-01114-w | 2021 | |
| The Possible Preventative Role of Lactate- and Butyrate-Producing Bacteria in Colorectal Carcinogenesis. | Song CH, Kim N, Nam RH, Choi SI, Jang JY, Kim EH, Choi J, Choi Y, Yoon H, Lee SM, Seok YJ. | Gut Liver | 10.5009/gnl230385 | 2024 | | |
| Genetics | Novel insights into carbohydrate utilisation, antimicrobial resistance, and sporulation potential in Roseburia intestinalis isolates across diverse geographical locations. | Mukhopadhya I, Martin JC, Shaw S, Gutierrez-Torrejon M, Boteva N, McKinley AJ, Gratz SW, Scott KP. | Gut Microbes | 10.1080/19490976.2025.2473516 | 2025 | |
| Yoyo Dieting, Post-Obesity Weight Loss, and Their Relationship with Gut Health. | Phuong-Nguyen K, McGee SL, Aston-Mourney K, Mcneill BA, Mahmood MQ, Rivera LR. | Nutrients | 10.3390/nu16183170 | 2024 | | |
| Effects of Lactiplantibacillus plantarum HNU082 intervention on fungi and bacteriophages in different intestinal segments of mice. | Liu X, Han Z, Ma W, Cui W, Zhen D, Jiang S, Zhang J. | BMC Microbiol | 10.1186/s12866-025-03784-0 | 2025 | | |
| Proton-pump inhibitors increase C. difficile infection risk by altering pH rather than by affecting the gut microbiome based on a bioreactor model. | Schumacher J, Muller P, Sulzer J, Faber F, Molitor B, Maier L. | Gut Microbes | 10.1080/19490976.2025.2519697 | 2025 | | |
| Designing function-specific minimal microbiomes from large microbial communities. | Raghu AK, Palanikumar I, Raman K. | NPJ Syst Biol Appl | 10.1038/s41540-024-00373-1 | 2024 | | |
| Fasting elicits gut microbiome signature changes that extend to type 1 diabetes patients | Graef F, Berger B, Bahr L, Stange R, Michalsen A, Paul F, Vallance B, Jacobson K. | Front Endocrinol (Lausanne) | 2025 | | ||
| Genetics | Metagenomic Investigation of the Short-Term Temporal and Spatial Dynamics of the Bacterial Microbiome and the Resistome Downstream of a Wastewater Treatment Plant in the Iskar River in Bulgaria. | Donchev D, Ivanov IN, Stoikov I, Ivanova M. | Microorganisms | 10.3390/microorganisms12061250 | 2024 | |
| Genetics | Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome. | Li Y, Pan G, Wang S, Li Z, Yang R, Jiang Y, Chen Y, Li SC, Shen B. | Brief Bioinform | 10.1093/bib/bbae620 | 2024 | |
| Pathogenicity | Function-based selection of synthetic communities enables mechanistic microbiome studies. | Hitch TCA, Bosch J, Bolsega S, Deschamps C, Etienne-Mesmin L, Treichel N, Blanquet-Diot S, Ocvirk S, Basic M, Clavel T. | ISME J | 10.1093/ismejo/wraf209 | 2025 | |
| Phylogeny | Gut Microbiota Associated with Clostridioides difficile Carriage in Three Clinical Groups (Inflammatory Bowel Disease, C. difficile Infection and Healthcare Workers) in Hospital Field. | Martinez E, Crevecoeur S, Thirion C, Grandjean J, Fall PA, Hayette MP, Michel M, Taminiau B, Louis E, Daube G. | Microorganisms | 10.3390/microorganisms11102527 | 2023 | |
| Restricted vs. ad libitum feeding during sow gestation affects piglet performance, behavior, and fecal microbiota composition. | Te Pas MFW, Kluivers-Poodt M, van Riel JW, Schokker D, Rebel JMJ. | J Anim Sci | 10.1093/jas/skaf118 | 2025 | | |
| Temporal response patterns of human gut microbiota to dietary fiber. | Lin X, Wang C, Liu B, Zhu Y, Zhai R, Zhang C. | Imeta | 10.1002/imt2.70046 | 2025 | | |
| Microbiome-metabolome dynamics associated with impaired glucose control and responses to lifestyle changes. | Wu H, Lv B, Zhi L, Shao Y, Liu X, Mitteregger M, Chakaroun R, Tremaroli V, Hazen SL, Wang R, Bergstrom G, Backhed F. | Nat Med | 10.1038/s41591-025-03642-6 | 2025 | | |
| Genetics | SAMPL-seq reveals micron-scale spatial hubs in the human gut microbiome. | Richardson M, Zhao S, Lin L, Sheth RU, Qu Y, Lee J, Moody T, Ricaurte D, Huang Y, Velez-Cortes F, Urtecho G, Wang HH. | Nat Microbiol | 10.1038/s41564-024-01914-4 | 2025 | |
| Phylogeny | Fecal microbiota is associated with extraintestinal manifestations in inflammatory bowel disease. | Hertz S, Anderson JM, Nielsen HL, Schachtschneider C, McCauley KE, Ozcam M, Larsen L, Lynch SV, Nielsen H. | Ann Med | 10.1080/07853890.2024.2338244 | 2024 | |
| Genetics | Profiling of the intestinal community of Clostridia: taxonomy and evolutionary analysis. | Candeliere F, Musmeci E, Amaretti A, Sola L, Raimondi S, Rossi M. | Microbiome Res Rep | 10.20517/mrr.2022.19 | 2023 | |
| Phylogeny | Gut microbiome diversity within Clostridia is negatively associated with human obesity. | Salazar-Jaramillo L, de la Cuesta-Zuluaga J, Chica LA, Cadavid M, Ley RE, Reyes A, Escobar JS. | mSystems | 10.1128/msystems.00627-24 | 2024 | |
| Regional antimicrobial resistance gene flow among the One Health sectors in China. | Feng Y, Lu X, Zhao J, Li H, Xu J, Li Z, Wang M, Peng Y, Tian T, Yuan G, Zhang Y, Liu J, Zhang M, Zhu La AT, Qu G, Mu Y, Guo W, Wu Y, Zhang Y, Wang D, Hu Y, Kan B. | Microbiome | 10.1186/s40168-024-01983-x | 2025 | | |
| Phylogeny | Distinct gut microbiomes in Thai patients with colorectal polyps. | Intarajak T, Udomchaiprasertkul W, Khoiri AN, Sutheeworapong S, Kusonmano K, Kittichotirat W, Thammarongtham C, Cheevadhanarak S. | World J Gastroenterol | 10.3748/wjg.v30.i27.3336 | 2024 | |
| Phylogeny | Exploring the gut microbiota in patients with pre-diabetes and treatment naïve diabetes type 2 - a pilot study. | Gravdal K, Kirste KH, Grzelak K, Kirubakaran GT, Leissner P, Saliou A, Casen C. | BMC Endocr Disord | 10.1186/s12902-023-01432-0 | 2023 | |
| Phenotype | Gut microbiota contributes to high-altitude hypoxia acclimatization of human populations. | Su Q, Zhuang DH, Li YC, Chen Y, Wang XY, Ge MX, Xue TY, Zhang QY, Liu XY, Yin FQ, Han YM, Gao ZL, Zhao L, Li YX, Lv MJ, Yang LQ, Xia TR, Luo YJ, Zhang Z, Kong QP. | Genome Biol | 10.1186/s13059-024-03373-w | 2024 | |
| Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood. | Lim JJ, Goedken M, Jin Y, Gu H, Cui JY. | Toxicol Sci | 10.1093/toxsci/kfae047 | 2024 | | |
| Phylogeny | Development of a Novel Metagenomic Biomarker for Prediction of Upper Gastrointestinal Tract Involvement in Patients With Crohn's Disease. | Kwak MS, Cha JM, Shin HP, Jeon JW, Yoon JY. | Front Microbiol | 10.3389/fmicb.2020.01162 | 2020 | |
| Phylogeny | A flexible high-throughput cultivation protocol to assess the response of individuals' gut microbiota to diet-, drug-, and host-related factors. | Zund JN, Pluss S, Mujezinovic D, Menzi C, von Bieberstein PR, de Wouters T, Lacroix C, Leventhal GE, Pugin B. | ISME Commun | 10.1093/ismeco/ycae035 | 2024 | |
| Critical evaluation of faecal microbiome preservation using metagenomic analysis. | Pribyl AL, Parks DH, Angel NZ, Boyd JA, Hasson AG, Fang L, MacDonald SL, Wills BA, Wood DLA, Krause L, Tyson GW, Hugenholtz P. | ISME Commun | 10.1038/s43705-021-00014-2 | 2021 | | |
| Influence of structural features and feruloylation on fermentability and ability to modulate gut microbiota of arabinoxylan in in vitro fermentation. | Li Z, Zhang H, He L, Hou Y, Che Y, Liu T, Xiong S, Zhang X, Luo S, Liu C, Chen T. | Front Microbiol | 10.3389/fmicb.2022.1113601 | 2022 | | |
| Phylogeny | Post Natal Microbial and Metabolite Transmission: The Path from Mother to Infant. | Velez-Ixta JM, Juarez-Castelan CJ, Ramirez-Sanchez D, Lazaro-Perez NDS, Castro-Arellano JJ, Romero-Maldonado S, Rico-Arzate E, Hoyo-Vadillo C, Salgado-Mancilla M, Gomez-Cruz CY, Krishnakumar A, Pina-Escobedo A, Benitez-Guerrero T, Pizano-Zarate ML, Cruz-Narvaez Y, Garcia-Mena J. | Nutrients | 10.3390/nu16131990 | 2024 | |
| Delivery mode and maternal gestational diabetes are important factors in shaping the neonatal initial gut microbiota. | Shi X, Liu Y, Ma T, Jin H, Zhao F, Sun Z. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1397675 | 2024 | | |
| A microbiota-directed complementary food intervention in 12-18-month-old Bangladeshi children improves linear growth. | Mostafa I, Hibberd MC, Hartman SJ, Hafizur Rahman MH, Mahfuz M, Hasan SMT, Ashorn P, Barratt MJ, Ahmed T, Gordon JI. | EBioMedicine | 10.1016/j.ebiom.2024.105166 | 2024 | | |
| The gut microbiome of Baka forager-horticulturalists from Cameroon is optimized for wild plant foods. | Rampelli S, Gallois S, D'Amico F, Turroni S, Fabbrini M, Scicchitano D, Candela M, Henry A. | iScience | 10.1016/j.isci.2024.109211 | 2024 | | |
| Changes in the gut bacterial communities in colon cancer surgery patients: an observational study. | Abbas M, Gaia N, Buchs NC, Delaune V, Girard M, Andrey DO, Meyer J, Schrenzel J, Ris F, Harbarth S, Lazarevic V. | Gut Pathog | 10.1186/s13099-021-00477-7 | 2022 | | |
| Phylogeny | Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom. | Doran BA, Chen RY, Giba H, Behera V, Barat B, Sundararajan A, Lin H, Sidebottom A, Pamer EG, Raman AS. | Cell Syst | 10.1016/j.cels.2024.12.008 | 2025 | |
| Molecular basis of Fab-dependent IgA antibody recognition by gut-bacterial metallopeptidases. | Marquez-Monino MA, Martinez Gascuena A, Azzam T, Persson A, Manzanares-Gomez A, Aguillo-Urarte M, Brown TT, Montero-Sagarminaga A, Lood R, Naegeli A, Connell SR, Sastre DE, Sundberg EJ, Trastoy B. | EMBO J | 10.1038/s44318-025-00518-w | 2025 | | |
| Gut-on-a-Chip for the Analysis of Bacteria-Bacteria Interactions in Gut Microbial Community: What Would Be Needed for Bacterial Co-Culture Study to Explore the Diet-Microbiota Relationship? | Lee KW, Shin JS, Lee CM, Han HY, O Y, Kim HW, Cho TJ. | Nutrients | 10.3390/nu15051131 | 2023 | | |
| Genetics | Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts. | Smith BJ, Li X, Shi ZJ, Abate A, Pollard KS. | Front Bioinform | 10.3389/fbinf.2022.867386 | 2022 | |
| Genetics | Rapid species-level metagenome profiling and containment estimation with sylph. | Shaw J, Yu YW. | Nat Biotechnol | 10.1038/s41587-024-02412-y | 2025 | |
| Lactate cross-feeding between Bifidobacterium species and Megasphaera indica contributes to butyrate formation in the human colonic environment. | Zhao S, Lau R, Zhong Y, Chen M-H. | Appl Environ Microbiol | 10.1128/aem.01019-23 | 2024 | | |
| Multi-site microbiota alteration is a hallmark of kidney stone formation. | Al KF, Joris BR, Daisley BA, Chmiel JA, Bjazevic J, Reid G, Gloor GB, Denstedt JD, Razvi H, Burton JP. | Microbiome | 10.1186/s40168-023-01703-x | 2023 | | |
| Cross-cohort single-nucleotide-variant profiling of gut microbiota suggests a novel gut-health assessment approach. | Ma C, Zhang Y, Jiang S, Teng F, Huang S, Zhang J. | mSystems | 10.1128/msystems.00828-23 | 2023 | | |
| Improved detection of microbiome-disease associations via population structure-aware generalized linear mixed effects models (microSLAM). | Goldman M, Zhao C, Pollard KS. | PLoS Comput Biol | 10.1371/journal.pcbi.1012277 | 2025 | | |
| Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria. | Shetty SA, Kuipers B, Atashgahi S, Aalvink S, Smidt H, de Vos WM. | NPJ Biofilms Microbiomes | 10.1038/s41522-022-00275-2 | 2022 | | |
| Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties. | Shetty SA, Kostopoulos I, Geerlings SY, Smidt H, de Vos WM, Belzer C. | ISME J | 10.1038/s41396-022-01255-2 | 2022 | | |
| Genetics | Metagenomic, metabolomic, and lipidomic shifts associated with fecal microbiota transplantation for recurrent Clostridioides difficile infection. | McMillan AS, Zhang G, Dougherty MK, McGill SK, Gulati AS, Baker ES, Theriot CM. | mSphere | 10.1128/msphere.00706-24 | 2024 | |
| Metabolism | Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers. | Tanno H, Fujii T, Hirano K, Maeno S, Tonozuka T, Sakamoto M, Ohkuma M, Tochio T, Endo A. | Gut Microbes | 10.1080/19490976.2020.1869503 | 2021 | |
| Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria. | Shuoker B, Pichler MJ, Jin C, Sakanaka H, Wu H, Gascuena AM, Liu J, Nielsen TS, Holgersson J, Nordberg Karlsson E, Juge N, Meier S, Morth JP, Karlsson NG, Abou Hachem M. | Nat Commun | 10.1038/s41467-023-37533-6 | 2023 | | |
| Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle. | Seong G, Kim N, Joung JG, Kim ER, Chang DK, Chun J, Hong SN, Kim YH. | Microorganisms | 10.3390/microorganisms8060874 | 2020 | | |
| Gut microbiota profile of COVID-19 patients: Prognosis and risk stratification (MicroCOVID-19 study). | Nobre JG, Delgadinho M, Silva C, Mendes J, Mateus V, Ribeiro E, Costa DA, Lopes M, Pedroso AI, Trigueiros F, Rodrigues MI, de Sousa CL, Brito M. | Front Microbiol | 10.3389/fmicb.2022.1035422 | 2022 | | |
| Genetics | Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome. | Wang S, Jiang Y, Che L, Wang RH, Li SC. | Nucleic Acids Res | 10.1093/nar/gkae515 | 2024 | |
| Metabolism | Can rumen bacteria communicate to each other? | Won MY, Oyama LB, Courtney SJ, Creevey CJ, Huws SA. | Microbiome | 10.1186/s40168-020-00796-y | 2020 | |
| Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis. | Dos Anjos Borges LG, Pastuschek J, Heimann Y, Dawczynski K, PEONS study group, Schleussner E, Pieper DH, Zollkau J. | BMC Med | 10.1186/s12916-023-02805-x | 2023 | | |
| Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women. | Ott B, Skurk T, Hastreiter L, Lagkouvardos I, Fischer S, Buttner J, Kellerer T, Clavel T, Rychlik M, Haller D, Hauner H. | Sci Rep | 10.1038/s41598-017-12109-9 | 2017 | | |
| Metabolism | Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics. | Shetty SA, Boeren S, Bui TPN, Smidt H, de Vos WM. | Environ Microbiol | 10.1111/1462-2920.15269 | 2020 | |
| Genetics | Species-Level Analysis of the Human Gut Microbiome Shows Antibiotic Resistance Genes Associated With Colorectal Cancer. | Liu C, Li Z, Ding J, Zhen H, Fang M, Nie C. | Front Microbiol | 10.3389/fmicb.2021.765291 | 2021 | |
| Short- and long-read metagenomics expand individualized structural variations in gut microbiomes. | Chen L, Zhao N, Cao J, Liu X, Xu J, Ma Y, Yu Y, Zhang X, Zhang W, Guan X, Yu X, Liu Z, Fan Y, Wang Y, Liang F, Wang D, Zhao L, Song M, Wang J. | Nat Commun | 10.1038/s41467-022-30857-9 | 2022 | | |
| Assessing the role of the gut microbiome in methylmercury demethylation and elimination in humans and gnotobiotic mice. | Coe GL, Krout IN, Munro-Ehrlich M, Beamish CR, Vorojeikina D, Colman DR, Boyd EJ, Walk ST, Rand MD. | Arch Toxicol | 10.1007/s00204-023-03548-7 | 2023 | | |
| Metabolism | How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration. | Xiao Y, Ng S, Nam KH, Ke A. | Nature | 10.1038/nature24020 | 2017 | |
| Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. | Hanson BT, Dimitri Kits K, Loffler J, Burrichter AG, Fiedler A, Denger K, Frommeyer B, Herbold CW, Rattei T, Karcher N, Segata N, Schleheck D, Loy A. | ISME J | 10.1038/s41396-021-00968-0 | 2021 | | |
| Phylogeny | The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping. | Beresford-Jones BS, Forster SC, Stares MD, Notley G, Viciani E, Browne HP, Boehmler DJ, Soderholm AT, Kumar N, Vervier K, Cross JR, Almeida A, Lawley TD, Pedicord VA. | Cell Host Microbe | 10.1016/j.chom.2021.12.003 | 2022 | |
| Metabolism | Flavonoid-Modifying Capabilities of the Human Gut Microbiome-An In Silico Study. | Goris T, Cuadrat RRC, Braune A. | Nutrients | 10.3390/nu13082688 | 2021 | |
| Genetics | Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions. | Blanco-Miguez A, Galvez EJC, Pasolli E, De Filippis F, Amend L, Huang KD, Manghi P, Lesker TR, Riedel T, Cova L, Puncochar M, Thomas AM, Valles-Colomer M, Schober I, Hitch TCA, Clavel T, Berry SE, Davies R, Wolf J, Spector TD, Overmann J, Tett A, Ercolini D, Segata N, Strowig T. | Cell Host Microbe | 10.1016/j.chom.2023.09.013 | 2023 | |
| Phylogeny | Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human Pathogen. | Kopf A, Bunk B, Coldewey SM, Gunzer F, Riedel T, Schrottner P. | Front Microbiol | 10.3389/fmicb.2021.712775 | 2021 | |
| Metabolism | Environmental and Intestinal Phylum Firmicutes Bacteria Metabolize the Plant Sugar Sulfoquinovose via a 6-Deoxy-6-sulfofructose Transaldolase Pathway. | Frommeyer B, Fiedler AW, Oehler SR, Hanson BT, Loy A, Franchini P, Spiteller D, Schleheck D. | iScience | 10.1016/j.isci.2020.101510 | 2020 | |
| Enzymology | Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria. | Schiessl J, Kosciow K, Garschagen LS, Hoffmann JJ, Heymuth J, Franke T, Deppenmeier U. | Appl Microbiol Biotechnol | 10.1007/s00253-021-11168-3 | 2021 | |
| Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. | Nayfach S, Paez-Espino D, Call L, Low SJ, Sberro H, Ivanova NN, Proal AD, Fischbach MA, Bhatt AS, Hugenholtz P, Kyrpides NC. | Nat Microbiol | 10.1038/s41564-021-00928-6 | 2021 | | |
| Genetics | Gut microbiome of helminth-infected indigenous Malaysians is context dependent. | Tee MZ, Er YX, Easton AV, Yap NJ, Lee IL, Devlin J, Chen Z, Ng KS, Subramanian P, Angelova A, Oyesola O, Sargsian S, Ngui R, Beiting DP, Boey CCM, Chua KH, Cadwell K, Lim YAL, Loke P, Lee SC. | Microbiome | 10.1186/s40168-022-01385-x | 2022 | |
| Insights from Bacteroides Species in Children with Type 1 Diabetes. | Matos J, Matos I, Calha M, Santos P, Duarte I, Cardoso Y, Faleiro ML. | Microorganisms | 10.3390/microorganisms9071436 | 2021 | | |
| Phylogeny | Gut microbes from the phylogenetically diverse genus Eubacterium and their various contributions to gut health. | Mukherjee A, Lordan C, Ross RP, Cotter PD. | Gut Microbes | 10.1080/19490976.2020.1802866 | 2020 | |
| Phylogeny | Comparative genomics of the genus Roseburia reveals divergent biosynthetic pathways that may influence colonic competition among species. | Hillman ET, Kozik AJ, Hooker CA, Burnett JL, Heo Y, Kiesel VA, Nevins CJ, Oshiro JMKI, Robins MM, Thakkar RD, Wu ST, Lindemann SR. | Microb Genom | 10.1099/mgen.0.000399 | 2020 | |
| A unified catalog of 204,938 reference genomes from the human gut microbiome. | Almeida A, Nayfach S, Boland M, Strozzi F, Beracochea M, Shi ZJ, Pollard KS, Sakharova E, Parks DH, Hugenholtz P, Segata N, Kyrpides NC, Finn RD. | Nat Biotechnol | 10.1038/s41587-020-0603-3 | 2021 | | |
| Metabolism | Impact of Gluten-Friendly Bread on the Metabolism and Function of In Vitro Gut Microbiota in Healthy Human and Coeliac Subjects. | Bevilacqua A, Costabile A, Bergillos-Meca T, Gonzalez I, Landriscina L, Ciuffreda E, D'Agnello P, Corbo MR, Sinigaglia M, Lamacchia C. | PLoS One | 10.1371/journal.pone.0162770 | 2016 | |
| Metabolism | Structure-dependent stimulation of gut bacteria by arabinoxylo-oligosaccharides (AXOS): a review. | Leschonski KP, Mortensen MS, Hansen LBS, Krogh KBRM, Kabel MA, Laursen MF. | Gut Microbes | 10.1080/19490976.2024.2430419 | 2024 | |
| Metabolism | Molecular Evolution of the Oxygen-Binding Hemerythrin Domain. | Alvarez-Carreno C, Becerra A, Lazcano A. | PLoS One | 10.1371/journal.pone.0157904 | 2016 | |
| Clostridium butyricum-altered lung microbiome is associated with enhanced anti-influenza effects via G-protein-coupled receptor120. | Hagihara M, Yamashita M, Ariyoshi T, Minemura A, Yoshida C, Higashi S, Oka K, Takahashi M, Ota A, Maenaka A, Iwasaki K, Hirai J, Shibata Y, Umemura T, Mori T, Kato H, Asai N, Mikamo H. | iScience | 10.1016/j.isci.2025.113502 | 2025 | | |
| Metabolism | Inulin-type fructan degradation capacity of Clostridium cluster IV and XIVa butyrate-producing colon bacteria and their associated metabolic outcomes. | Moens F, De Vuyst L | Benef Microbes | 10.3920/BM2016.0142 | 2017 | |
| Metabolism | Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides. | Riviere A, Gagnon M, Weckx S, Roy D, De Vuyst L | Appl Environ Microbiol | 10.1128/AEM.02089-15 | 2015 | |
| Phylogeny | Characterization of an O-desmethylangolensin-producing bacterium isolated from human feces. | Yokoyama S, Niwa T, Osawa T, Suzuki T | Arch Microbiol | 10.1007/s00203-009-0524-5 | 2009 | |
| Phylogeny | Opinions 100, 101 and 102. | Arahal DR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004390 | 2020 | |
| Phylogeny | Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion. | Duncan SH, Flint HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/004580-0 | 2008 | |
| Phylogeny | Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows. | Rosero JA, Killer J, Sechovcova H, Mrazek J, Benada O, Fliegerova K, Havlik J, Kopecny J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000788 | 2015 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive162023.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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