Name: Hymenobacter elongatus JCM 17223
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161979

Type strain:

Species: Hymenobacter elongatus

Culture col. no.: JCM 17223

Strain history: J. L. Klassen and J. M. Foght VUG-A112.

NCBI tax ID(s): 877208 (species)

SI-ID 371054

LMG 26016, JCM 17223

Section

Hymenobacter elongatus JCM 17223 is a psychrophilic bacterium that was isolated from Basal ice.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter elongatus**
	Full Scientific Name (LPSN)	Hymenobacter elongatus Klassen and Foght 2011

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	18 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Basal ice
[Ref.: #67770]	Geographic location (country and/or sea, region)	Victoria Upper Glacier
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ454797 (>99% sequence identity) for Hymenobacter elongatus from Microbeatlas

Aquatic Samples	5
Soil Samples	18
Animal Samples	8
Plant Samples	1
Total Samples	32

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter elongatus strain VUG-A112 16S ribosomal RNA gene, partial sequence	GQ454797	1365	ENA	877208 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter elongatus JCM 17223	GCA_004745955	contig	GenBank	877208 tax ID
[Ref.: #66792]	Hymenobacter elongatus strain JCM 17223	877208.3	wgs	PATRIC	877208 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter elongatus strain JCM 17223 PATRIC: 877208.3
[Ref.: #69480]	motile	no	94.057	no
[Ref.: #69480]	flagellated	no	97.338	no
[Ref.: #69480]	gram-positive	no	96.903	no
[Ref.: #69480]	anaerobic	no	99.304	no
[Ref.: #69480]	halophile	no	91.908	no
[Ref.: #69480]	spore-forming	no	92.019	no
[Ref.: #69480]	thermophile	no	98.698	yes
[Ref.: #69480]	glucose-util	yes	73.641	no
[Ref.: #69480]	aerobic	yes	91.765	no
[Ref.: #69480]	glucose-ferment	no	92.184	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17223

[Ref.: #113481]

SI-ID 371054

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter fodinae sp. nov. and Hymenobacter metallicola sp. nov., isolated from abandoned lead-zinc mine.	Feng GD, Zhang J, Chen W, Wang SN, Zhu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004313	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113481

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371054.1 )

* These data were automatically processed and therefore are not curated

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Hymenobacter elongatus strain JCM 17223

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