Name: Bacteroides salyersiae DSM 18765
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1619

Type strain:

Species: Bacteroides salyersiae

Culture col. no.: DSM 18765, ATCC BAA-997, CCUG 48945, JCM 12988, WAL 10018

Strain history: CCUG 48945 <-- Y. L. Song WAL 10018.

NCBI tax ID(s): 1121101 (strain), 291644 (species)

SI-ID 138974

ATCC BAA-997, CCUG 48945, JCM 12988, DSM 18765

Special Collections

Other strains from Bacteroides salyersiae

Section

Bacteroides salyersiae DSM 18765 is an anaerobe, mesophilic bacterium that was isolated from human appendix tissue.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides salyersiae**
	Full Scientific Name (LPSN)	Bacteroides salyersiae corrig. Song et al. 2005

Synonym

Bacteroides salyersae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.498

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #7686]	Incubation period	1-2 days

[Ref.: #58399]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #58399]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7686]	Oxygen tolerance	anaerobe
[Ref.: #58399]	Oxygen tolerance	anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.478

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7686]	Sample type/isolated from	human appendix tissue
[Ref.: #7686]	Geographic location (country and/or sea, region)	Los Angeles
[Ref.: #7686]	Country	USA
[Ref.: #7686]	Country ISO 3 Code	USA
[Ref.: #7686]	Continent	North America

[Ref.: #58399]	Sample type/isolated from	Human appendix tissue
[Ref.: #58399]	Sampling date	1994
[Ref.: #58399]	Geographic location (country and/or sea, region)	Los Angeles
[Ref.: #58399]	Country	USA
[Ref.: #58399]	Country ISO 3 Code	USA
[Ref.: #58399]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human appendix tissue
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY608696 (>99% sequence identity) for Bacteroides salyersiae subclade from Microbeatlas

Aquatic Samples	3095
Soil Samples	568
Animal Samples	104456
Plant Samples	223
Total Samples	108342

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7686]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7686]	Bacteroides sp. WAL 10018 16S ribosomal RNA gene, partial sequence	AY608696	1419	GenBank ENA	291644 tax ID
[Ref.: #20218]	Bacteroides salyersiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 12988	AB510707	1473	GenBank ENA	291644 tax ID	*
[Ref.: #20218]	Bacteroides salyersiae strain JCM12988 16S ribosomal RNA gene, partial sequence	EU136690	2033	GenBank ENA	291644 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	GCA_000381365	scaffold	GenBank ENA	1121101 tax ID
[Ref.: #67770]	Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	GCA_000613685	contig	GenBank ENA	1121101 tax ID
[Ref.: #66792]	Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	1121101.7	wgs	PATRIC	1121101 tax ID	*
[Ref.: #66792]	Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 strain Bacteroides salyersiae 82A3	1121101.41	wgs	PATRIC	1121101 tax ID	*
[Ref.: #66792]	Bacteroides salyersiae JCM 12988	2585427949	draft	JGI IMG/M	1121101 tax ID	*
[Ref.: #66792]	Bacteroides salyersiae DSM 18765	2531839250	draft	JGI IMG/M	1121101 tax ID	*

[Ref.: #7686]	GC-content	42.0 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 PATRIC: 1121101.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.498	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	79.493	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.478	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.87	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.742	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #7686]

Culture collection no.

DSM 18765, ATCC BAA-997, CCUG 48945, JCM 12988, WAL 10018

[Ref.: #71264]

SI-ID 138974

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	"Bacteroides nordii" sp. nov. and "Bacteroides salyersae" sp. nov. isolated from clinical specimens of human intestinal origin.	Song YL, Liu CX, McTeague M, Finegold SM	J Clin Microbiol	10.1128/JCM.42.12.5565-5570.2004	2004	*

References

#7686

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18765

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#58399 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48945

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71264

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138974.1 )

* These data were automatically processed and therefore are not curated

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Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988

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