Bacteroides salyersiae (DSM 18765, ATCC BAA-997, CCUG 48945)

Name: Bacteroides salyersiae (DSM 18765, ATCC BAA-997, CCUG 48945)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1619

Type strain

Culture col. no. DSM 18765 ATCC BAA-997 CCUG 48945 JCM 12988 WAL 10018

NCBI tax ID(s) 1121101 291644

Special Collections DSMZ CCUG JCM

Links

Bacteroides salyersiae DSM 18765 is an anaerobe, mesophilic prokaryote that was isolated from human appendix tissue.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 138974

ATCC BAA-997,CCUG 48945,JCM 12988,DSM 18765

@ref 20215

Last LPSN update 2025-12-16 09:47:09

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides salyersiae

Full scientific name Bacteroides salyersiae corrig. Song et al. 2005

Synonyms (1)

Bacteroides salyersae

BacDive ID	Other strains from **Bacteroides salyersiae** (1)	Type strain
159526	B. salyersiae H3_17, DSM 108143

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.5
125438		95.498
125439		99.8

Colony morphology

@ref	Incubation period
7686	1-2 days
58399	1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7686	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water
7686	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
7686	positive	growth	37
58399	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
7686	anaerobe
58399	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.478
125439		93.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	+	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	+	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	+	builds acid from	from API 20A
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	+	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A
68367	35581 ChEBI	indole	+	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68367	gelatinase	+		from API 20A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
7686	+	-	+	-	+	+	+	-	+	+	+	+	+	+/-	+	-	+	+/-	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7686	-	+	+	+	-	+	+	-	+	+	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	+	+	+	+
7686	-	-	+	+	-	+	+	-	-	+	+	+	+	-	+	+	+	-	-	+	-	-	-	-	+	-	-	+	-
7686	-	-	-	+	-	+	+	-	-	-	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body-Site	#Gastrointestinal tract

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7686	human appendix tissue	Los Angeles	USA	USA	North America
58399	Human appendix tissue	Los Angeles	USA	USA	North America
67770	Human appendix tissue

Taxonmaps

69479

Global distribution of 16S sequence AY608696 (>99% sequence identity) for Bacteroides salyersiae subclade from Microbeatlas

Aquatic Samples	3095
Soil Samples	568
Animal Samples	104456
Plant Samples	223
Total Samples	108342

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7686	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Bact_saly_DSM_18765_V1 assembly for Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	scaffold	GCA_000381365	1121101.3	2531839250	1121101	75.31
66792	82A3 assembly for Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	contig	GCA_900624765	1121101.41	2916278816	1121101	69.81
67770	ASM61368v1 assembly for Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988	contig	GCA_000613685	1121101.7	2585427949	1121101	30.68

Genome browser: GCA_000381365

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacteroides salyersiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 12988	AB510707	1473	291644
20218	Bacteroides salyersiae strain JCM12988 16S ribosomal RNA gene, partial sequence	EU136690	2033	291644
7686	Bacteroides sp. WAL 10018 16S ribosomal RNA gene, partial sequence	AY608696	1419	291644

GC content

@ref	GC-content (mol%)
7686	42.0
67770	42

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988
NCBI: GCA_000381365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	89.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	no	60.90	no
125439	spore_formation	BacteriaNetⓘ	no	93.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988
PATRIC: 1121101.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	yes	79.49	yes
125438	spore-forming	spore-formingⓘ	no	90.48	no
125438	aerobic	aerobicⓘ	no	88.87	yes
125438	thermophilic	thermophileⓘ	no	94.74	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Title	Authors	Journal	DOI	Year
In Vitro Influence of Specific Bacteroidales Strains on Gut and Liver Health Related to Metabolic Dysfunction-Associated Fatty Liver Disease.	Garcia-Morena D, Fernandez-Cantos MV, Escalera SL, Lok J, Iannone V, Cancellieri P, Maathuis W, Panagiotou G, Aranzamendi C, Aidy SE, Kolehmainen M, El-Nezami H, Wellejus A, Kuipers OP.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10219-1	2025
A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.	Buzun E, Hsu CY, Sejane K, Oles RE, Vasquez Ayala A, Loomis LR, Zhao J, Rossitto LA, McGrosso DM, Gonzalez DJ, Bode L, Chu H.	Cell Host Microbe	10.1016/j.chom.2023.12.014	2024
Strain-level fitness in the gut microbiome is an emergent property of glycans and a single metabolite.	Park SY, Rao C, Coyte KZ, Kuziel GA, Zhang Y, Huang W, Franzosa EA, Weng JK, Huttenhower C, Rakoff-Nahoum S.	Cell	10.1016/j.cell.2022.01.002	2022
Iron acquisition by a commensal bacterium modifies host nutritional immunity during Salmonella infection.	Spiga L, Fansler RT, Perera YR, Shealy NG, Munneke MJ, David HE, Torres TP, Lemoff A, Ran X, Richardson KL, Pudlo N, Martens EC, Folta-Stogniew E, Yang ZJ, Skaar EP, Byndloss MX, Chazin WJ, Zhu W.	Cell Host Microbe	10.1016/j.chom.2023.08.018	2023
Evidence of extensive DNA transfer between bacteroidales species within the human gut.	Coyne MJ, Zitomersky NL, McGuire AM, Earl AM, Comstock LE.	mBio	10.1128/mbio.01305-14	2014
Unraveling the causal relationship between gut microbiota and chronic hepatitis B: A large-scale mediation Mendelian randomization analysis.	Yuan T, Chen J, Yang J, Pu J, Lu Y, Zheng H, Xu J.	Microb Pathog	10.1016/j.micpath.2025.108179	2025
Diverse Metabolic Control of Phosphoglucomutases by Bisphosphorylated Sugars in Heterotrophic Bacteria.	Alford JT, Borisova-Mayer M, Mayer C, Forchhammer K.	Microb Physiol	10.1159/000547435	2025
Dissecting Causal Relationships Between Gut Microbiota, Plasma Metabolites and Bladder Cancer: A Two-Step Mendelian Randomization Study.	Che K, Qian D, Cui S, Xie F.	Health Sci Rep	10.1002/hsr2.71206	2025
Gut Escherichia coli promotes lung cancer by increasing circulating STAMBP production.	Li X, Mo Y, Shang S, Wu M, Ma S, Zhai Z, Song Q, Chen D.	Discov Oncol	10.1007/s12672-025-02206-x	2025
Association between the Maternal Gut Microbiome and Macrosomia.	Zhong Z, An R, Ma S, Zhang N, Zhang X, Chen L, Wu X, Lin H, Xiang T, Tan H, Chen M.	Biology (Basel)	10.3390/biology13080570	2024
Akkermansia muciniphila is associated with normal muscle mass and Eggerthella is related with sarcopenia in cirrhosis.	Efremova I, Alieva A, Maslennikov R, Poluektova E, Zharkova M, Kudryavtseva A, Krasnov G, Zharikov Y, Nerestyuk Y, Karchevskaya A, Ivashkin V.	Front Nutr	10.3389/fnut.2024.1438897	2024
Dissecting the Genetic Correlations and Causal Effects of Gut Microbiota on Pan-Cancer Phenotype: Driven by Common Dietary Preferences.	Zhou Y, Feng Y, Wang Y, Wang Y, Liu X, Sun T, Xu J.	Food Sci Nutr	10.1002/fsn3.70708	2025
Effects of gut microbiota on prostatic cancer: a two-sample Mendelian randomization study.	Xie Q, Hu B.	Front Microbiol	10.3389/fmicb.2023.1250369	2023
Bacteroides salyersiae Is a Candidate Probiotic Species with Potential Anti-Colitis Properties in the Human Colon: First Evidence from an In Vivo Mouse Model.	Dai W, Lv Y, Quan M, Ma M, Shang Q, Yu G.	Nutrients	10.3390/nu16172918	2024
High interindividual variability of indoxyl sulfate production identified by an oral tryptophan challenge test.	Lin TY, Wu WK, Hung SC.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00651-8	2025
Anxiety-related gut microbiota alterations in Parkinson's disease: distinct associations compared to healthy individuals.	Lin SH, Lin RJ, Chan KY, Chu CL, Chen YL, Fu SC.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1594152	2025
Unraveling the immunological landscape and gut microbiome in sepsis: a comprehensive approach to diagnosis and prognosis.	Luo Y, Gao J, Su X, Li H, Li Y, Qi W, Han X, Han J, Zhao Y, Zhang A, Zheng Y, Qian F, He H.	EBioMedicine	10.1016/j.ebiom.2025.105586	2025
Exploring Protein Functions of Gut Bacteriome and Mycobiome in Thai Infants Associated with Atopic Dermatitis Through Metaproteomic and Host Interaction Analysis.	Chantanaskul T, Patumcharoenpol P, Roytrakul S, Kingkaw A, Vongsangnak W.	Int J Mol Sci	10.3390/ijms252413533	2024
Multi-omics study unravels gut microbiota and metabolites alteration in patients with Wilson's disease.	Cai X, Dai J, Xie Y, Xu S, Liu M.	Sci Rep	10.1038/s41598-024-71740-5	2024
Integration analysis of tumor metagenome and peripheral immunity data of diffuse large-B cell lymphoma.	Zhang Y, Han S, Xiao X, Zheng L, Chen Y, Zhang Z, Gao X, Zhou S, Yu K, Huang L, Fu J, Hong Y, Jiang J, Qian W, Yang H, Shen J.	Front Immunol	10.3389/fimmu.2023.1146861	2023
Pioneer colonizers: Bacteria that alter the chicken intestinal morphology and development of the microbiota.	Lee MD, Pedroso AA, Lumpkins B, Cho Y, Maurer JJ.	Front Physiol	10.3389/fphys.2023.1139321	2023
Association of Gut Dysbiosis with Disease Phenotype and Treatment in Systemic Lupus Erythematosus.	Medina-Martinez I, Gil-Gutierrez R, Garcia-Garcia J, de la Hera-Fernandez FJ, Navarrete-Navarrete N, Zamora-Pasadas M, Ortego-Centeno N, Callejas-Rubio JL, Garcia-Garcia F, Galvez-Peralta J, Rodriguez-Nogales A, Correa-Rodriguez M, Rueda-Medina B.	Med Sci (Basel)	10.3390/medsci13030151	2025
[Bacteremia due to strict anaerobes].	Pina Delgado C, Bolanos Rivero M, Carmona Tello MC, Ramirez Estupinan CJ, Hernandez Cabrera PM, de Miguel Martinez I.	Rev Esp Quimioter	10.37201/req/063.2024	2025
Prognostic value of 24-hour cultivation of peritoneal fluid to distinguish complicated from uncomplicated acute appendicitis: a prospective cohort study.	Mark-Christensen A, Bro Sorensen D, Qvist N, Justesen US, Moller S, Ellebaek MB.	Langenbecks Arch Surg	10.1007/s00423-024-03428-3	2024
Understanding the role of the gut microbiome in solid tumor responses to immune checkpoint inhibitors for personalized therapeutic strategies: a review.	Lim MY, Hong S, Nam YD.	Front Immunol	10.3389/fimmu.2024.1512683	2024
Elderly Patients with Mild Cognitive Impairment Exhibit Altered Gut Microbiota Profiles.	Pan Q, Li YQ, Guo K, Xue M, Gan Y, Wang K, Xu DB, Tu QY.	J Immunol Res	10.1155/2021/5578958	2021
The Effect of Cucumaria frondosa Tentacles Hydrolysates on Dextran Sulfate Sodium-Induced Colitis: Integrated Metagenomics and Metabolomics Analysis.	Zhang S, Wang Q, Gong S, Li M, Zhang Y, Sun L, Sun L.	Foods	10.3390/foods14203483	2025
Restoration of intestinal secondary bile acid synthesis: A potential approach to improve pancreatic beta cell function in type 1 diabetes.	Liu Q, Hua Y, He R, Xiang L, Li S, Zhang Y, Chen R, Qian L, Jiang X, Wang C, Li Y, Wu H, Liu Y.	Cell Rep Med	10.1016/j.xcrm.2025.102130	2025
3-O-Acetyl-11-Keto-beta-Boswellic Acid Suppresses Colitis-Associated Colorectal Cancer by Inhibiting the NF-Kb Signaling Pathway and Remodeling Gut Microbiota.	Xu F, Li W, Zheng XJ, Hao Y, Yang YH, Yang H, Zhang S, Cao WX, Li XX, Zhang X, Du GH, Ji TF, Wang JH.	Oncol Res	10.32604/or.2025.062386	2025
Species-level enterosignatures predict clinical phenotypes in chronic hepatitis B and causal triangulation of gut-metabolite-CHB interactions.	Yuan T, Chen J, Yang J, Li L, Lu S, Pu J, Sun Y, Lin W, Lu Y, Zhu Z, Zheng H, Xu J.	Front Microbiol	10.3389/fmicb.2025.1683451	2025
Polymicrobial Solitary Retroperitoneal Abscess Due to Sigmoid Colon Perforation.	Takase Y, Yang YM, Kitagawa K, Nakano Y, Miura S, Oshikiri T, Kakeji Y, Shigemura K, Fujisawa M.	Kobe J Med Sci		2021
TphPMF: A microbiome data imputation method using hierarchical Bayesian Probabilistic Matrix Factorization.	Han X, Song K.	PLoS Comput Biol	10.1371/journal.pcbi.1012858	2025
Serotonergic and immunomodulatory properties of the psychobiotic candidate Bacteroides finegoldii UO.H1052 and its extracellular vesicles.	Yousuf B, Esmail GA, Nazemof N, Bouhlel NE, Minic Z, Hammami R.	Appl Environ Microbiol	10.1128/aem.00891-25	2025
Long-term health outcomes in adolescents with obesity treated with faecal microbiota transplantation: 4-year follow-up	Wilson B, Zuppi M, Derraik J, Albert B, Tweedie-Cullen R, Leong K, Beck K, Vatanen T, O'Sullivan J, Cutfield W.	Nat Commun		2025
Structure analysis of human gut microbiota associated with single-celled gut protists using Next-Generation Sequencing of 16S and 18S rRNA genes.	Belkessa S, Pasolli E, Medrouh B, Berg RPKD, Andersen LO', Nielsen HV, Stensvold CR.	Comput Struct Biotechnol J	10.1016/j.csbj.2025.06.006	2025
Interplay of Lymphocytes with the Intestinal Microbiota in Children with Nonalcoholic Fatty Liver Disease.	Liang T, Li D, Zunong J, Li M, Amaerjiang N, Xiao H, Khattab NM, Vermund SH, Hu Y.	Nutrients	10.3390/nu14214641	2022
Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event.	Gschwind R, Petitjean M, Fournier C, Lao J, Clermont O, Nordmann P, Mellmann A, Denamur E, Poirel L, Ruppe E.	Antimicrob Agents Chemother	10.1128/aac.01459-23	2024
Review of Mendelian randomization studies on common male-specific diseases	Pang Q, Chang Z, Liu H, Chen J, Ma S, Zhang C, Sun Z.	Front Endocrinol (Lausanne)		2025
Sustained mucosal colonization and fecal metabolic dysfunction by Bacteroides associates with fecal microbial transplant failure in ulcerative colitis patients.	Zhang B, Magnaye KM, Stryker E, Moltzau-Anderson J, Porsche CE, Hertz S, McCauley KE, Smith BJ, Zydek M, Pollard KS, Ma A, El-Nachef N, Lynch SV.	Sci Rep	10.1038/s41598-024-62463-8	2024
Modulating effects of microbiota on synbiotic intervention outcomes for microbiota-derived trimethylamine, trimethylamine N-oxide and indoxyl sulfate in healthy young medical students: insights from a 12-week randomized clinical trial.	Kaczmarczyk M, Kedzierska-Kapuza K, Skonieczna-Zydecka K, Surowka A, Drozdzal S, Lechowicz K, Buszman M, Szkudlarek U, Cembrowska-Lech D, Podsiadlo K, Samborowska E, Loniewski I, Ciechanowski K.	J Transl Med	10.1186/s12967-025-07345-x	2025
Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients.	Derosa L, Routy B, Fidelle M, Iebba V, Alla L, Pasolli E, Segata N, Desnoyer A, Pietrantonio F, Ferrere G, Fahrner JE, Le Chatellier E, Pons N, Galleron N, Roume H, Duong CPM, Mondragon L, Iribarren K, Bonvalet M, Terrisse S, Rauber C, Goubet AG, Daillere R, Lemaitre F, Reni A, Casu B, Alou MT, Alves Costa Silva C, Raoult D, Fizazi K, Escudier B, Kroemer G, Albiges L, Zitvogel L.	Eur Urol	10.1016/j.eururo.2020.04.044	2020
The gut microbiota modulates responses to anti-PD-1 and chemotherapy combination therapy and related adverse events in patients with advanced solid tumors.	Wu Z, Zhang S, Li L, Huang Z, Huang D, Hu Y.	Front Oncol	10.3389/fonc.2022.887383	2022
Glucose-1,6-Bisphosphate, a Key Metabolic Regulator, Is Synthesized by a Distinct Family of alpha-Phosphohexomutases Widely Distributed in Prokaryotes.	Neumann N, Friz S, Forchhammer K.	mBio	10.1128/mbio.01469-22	2022
Investigating volatile compounds in the Bacteroides secretome.	Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Konanov DN, Efimov BA, Bagrov DV, Evtushenko EG, Chaplin AV, Silantiev AS, Filatova JV, Kolesnikova IV, Vanyushkina AA, Stimpson J, Zakharzhevskaya NB.	Front Microbiol	10.3389/fmicb.2023.1164877	2023
Gut microbiome is associated with asthma and race in children with food allergy.	Mahdavinia M, Fyolek JP, Jiang J, Thivalapill N, Bilaver LA, Warren C, Fox S, Nimmagadda SR, Newmark PJ, Sharma H, Assa'ad A, Seed PC, Gupta RS.	J Allergy Clin Immunol	10.1016/j.jaci.2023.07.024	2023
Immuno-Microbial Signature of Vaccine-Induced Immunity against SARS-CoV-2.	Umeda L, Torres A, Kunihiro BP, Rubas NC, Wells RK, Phankitnirundorn K, Peres R, Juarez R, Maunakea AK.	Vaccines (Basel)	10.3390/vaccines12060637	2024
Structure and function of Bs164 beta-mannosidase from Bacteroides salyersiae the founding member of glycoside hydrolase family GH164.	Armstrong Z, Davies GJ.	J Biol Chem	10.1074/jbc.ra119.011591	2020
Species-level verification of Phascolarctobacterium association with colorectal cancer.	Bucher-Johannessen C, Senthakumaran T, Avershina E, Birkeland E, Hoff G, Bemanian V, Tunsjo H, Rounge TB.	mSystems	10.1128/msystems.00734-24	2024
Lubiprostone in chronic kidney disease: Insights into mitochondrial function and polyamines from a randomized phase 2 clinical trial	Watanabe S, Nakayama M, Yokoo T, Sanada S, Ubara Y, Komatsuda A, Asanuma K, Suzuki Y, Konta T, Kazama J, Suzuki T, Fukuda S, Soga T, Yamada T, Mizutani S, Matsumoto M, Naito Y, Taguchi K, Fukami K, Kashiwagi H, Kikuchi K, Suzuki C, Tokuno H, Urasato M, Kujirai R, Matsumoto Y, Akiyama Y, Tomioka Y, Itai S, Tongu Y, Mishima E, Kawabe C, Kasahara T, Ogata Y, Toyohara T, Sato T, Tanaka T, Abe T.	Sci Adv		2025
Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study.	Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y.	Front Microbiol	10.3389/fmicb.2023.1181328	2023
Two Polysaccharides from Liupao Tea Exert Beneficial Effects in Simulated Digestion and Fermentation Model In Vitro.	Qiu S, Huang L, Xia N, Teng J, Wei B, Lin X, Khan MR.	Foods	10.3390/foods11192958	2022
Draft Genome Sequence of Natranaerobius trueperi DSM 18760^T, an Anaerobic, Halophilic, Alkaliphilic, Thermotolerant Bacterium Isolated from a Soda Lake.	Guo X, Liao Z, Holtzapple M, Hu Q, Zhao B.	Genome Announc	10.1128/genomea.00785-17	2017
Checkpoint inhibitor responses can be regulated by the gut microbiota - A systematic review.	Zeriouh M, Raskov H, Kvich L, Gogenur I, Bennedsen ALB.	Neoplasia	10.1016/j.neo.2023.100923	2023
Association of gestational diabetes mellitus with changes in gut microbiota composition at the species level.	Chen F, Gan Y, Li Y, He W, Wu W, Wang K, Li Q.	BMC Microbiol	10.1186/s12866-021-02207-0	2021
Gut microbiota-derived gamma-aminobutyric acid from metformin treatment reduces hepatic ischemia/reperfusion injury through inhibiting ferroptosis.	Wang F, Liu X, Huang F, Zhou Y, Wang X, Song Z, Wang S, Wang X, Shi D, Ruan G, Ji X, Zhang E, Tan Z, Ye Y, Wang C, Zhu J, Wang W.	Elife	10.7554/elife.89045	2024
Defense systems are pervasive across chromosomally integrated mobile genetic elements and are inversely correlated to virulence and antimicrobial resistance.	Botelho J.	Nucleic Acids Res	10.1093/nar/gkad282	2023
Towards an understanding of the enzymatic degradation of complex plant mannan structures.	Mafa MS, Malgas S.	World J Microbiol Biotechnol	10.1007/s11274-023-03753-7	2023
Crystal structure of a homotrimeric verrucomicrobial exo-beta-1,4-mannosidase active in the hindgut of the wood-feeding termite Reticulitermes flavipes.	Kalyani DC, Reichenbach T, Keskitalo MM, Conrad J, Aspeborg H, Divne C.	J Struct Biol X	10.1016/j.yjsbx.2021.100048	2021
Long-Term Lactulose Administration Improves Dysbiosis Induced by Antibiotic and C. difficile in the PathoGut^TM SHIME Model.	Calatayud M, Duysburgh C, Van den Abbeele P, Franckenstein D, Kuchina-Koch A, Marzorati M.	Antibiotics (Basel)	10.3390/antibiotics11111464	2022
LolA and LolB are conserved in Bacteroidota and are crucial for gliding motility and Type IX secretion.	De Smet T, Baland E, Giovannercole F, Mignon J, Lizen L, Dugauquier R, Lauber F, Dieu M, Lima-Mendez G, Michaux C, Devos D, Renzi F.	Commun Biol	10.1038/s42003-025-07817-2	2025
Distinctive Gut Microbiota Alteration Is Associated with Poststroke Functional Recovery: Results from a Prospective Cohort Study.	Dang Y, Zhang X, Zheng Y, Yu B, Pan D, Jiang X, Yan C, Yu Q, Lu X.	Neural Plast	10.1155/2021/1469339	2021
Changes in Gut Microbiota and Systemic Inflammation after Synbiotic Supplementation in Patients with Systemic Lupus Erythematosus: A Randomized, Double-Blind, Placebo-Controlled Trial.	Widhani A, Djauzi S, Suyatna FD, Dewi BE.	Cells	10.3390/cells11213419	2022
A pilot study of dietary fibres on pathogen growth in an ex vivo colonic model reveals their potential ability to limit vancomycin-resistant Enterococcus expansion.	Strain R, Tran TTT, Mills S, Stanton C, Ross RP.	Microbiome Res Rep	10.20517/mrr.2022.14	2023
Determinants of raffinose family oligosaccharide use in Bacteroides species.	Basu A, Adams AND, Degnan PH, Vanderpool CK.	J Bacteriol	10.1128/jb.00235-24	2024
How Discrimination Gets Under the Skin: Biological Determinants of Discrimination Associated With Dysregulation of the Brain-Gut Microbiome System and Psychological Symptoms.	Dong TS, Gee GC, Beltran-Sanchez H, Wang M, Osadchiy V, Kilpatrick LA, Chen Z, Subramanyam V, Zhang Y, Guo Y, Labus JS, Naliboff B, Cole S, Zhang X, Mayer EA, Gupta A.	Biol Psychiatry	10.1016/j.biopsych.2022.10.011	2023
Uncovering the microbiota in renal cell carcinoma tissue using 16S rRNA gene sequencing.	Wang J, Li X, Wu X, Wang Z, Zhang C, Cao G, Liu K, Yan T.	J Cancer Res Clin Oncol	10.1007/s00432-020-03462-w	2021
Impact of cigarette smoking on gut microbial dysbiosis: a structured literature review.	Imade EE, Obayagbona NO.	Gut Microbiome (Camb)	10.1017/gmb.2024.3	2024
A history of repeated antibiotic usage leads to microbiota-dependent mucus defects.	Krigul KL, Feeney RH, Wongkuna S, Aasmets O, Holmberg SM, Andreson R, Puertolas-Balint F, Pantiukh K, Sootak L, Org T, Tenson T, Org E, Schroeder BO.	Gut Microbes	10.1080/19490976.2024.2377570	2024
Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk.	Ranaivo H, Thirion F, Bera-Maillet C, Guilly S, Simon C, Sothier M, Van Den Berghe L, Feugier-Favier N, Lambert-Porcheron S, Dussous I, Roger L, Roume H, Galleron N, Pons N, Le Chatelier E, Ehrlich SD, Laville M, Dore J, Nazare JA.	Gut Microbes	10.1080/19490976.2022.2044722	2022
Structural and Functional Characterization of the Gut Microbiota in Elderly Women With Migraine.	Chen J, Wang Q, Wang A, Lin Z.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00470	2019
Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition.	Castro-Mejia JL, O'Ferrall S, Krych L, O'Mahony E, Namusoke H, Lanyero B, Kot W, Nabukeera-Barungi N, Michaelsen KF, Molgaard C, Friis H, Grenov B, Nielsen DS.	Gut Microbes	10.1080/19490976.2020.1712982	2020
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.	Ostrowski MP, La Rosa SL, Kunath BJ, Robertson A, Pereira G, Hagen LH, Varghese NJ, Qiu L, Yao T, Flint G, Li J, McDonald SP, Buttner D, Pudlo NA, Schnizlein MK, Young VB, Brumer H, Schmidt TM, Terrapon N, Lombard V, Henrissat B, Hamaker B, Eloe-Fadrosh EA, Tripathi A, Pope PB, Martens EC.	Nat Microbiol	10.1038/s41564-022-01093-0	2022
Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.	Ronne ME, Tandrup T, Madsen M, Hunt CJ, Myers PN, Moll JM, Holck J, Brix S, Strube ML, Aachmann FL, Wilkens C, Svensson B.	Appl Environ Microbiol	10.1128/aem.01185-23	2023
The Clinical Link between Human Intestinal Microbiota and Systemic Cancer Therapy.	Aarnoutse R, Ziemons J, Penders J, Rensen SS, de Vos-Geelen J, Smidt ML.	Int J Mol Sci	10.3390/ijms20174145	2019
The evolving understanding of systemic mechanisms in organ-specific IgA nephropathy: a focus on gut-kidney crosstalk.	Wang X, Zhou XJ, Qiao X, Falchi M, Liu J, Zhang H.	Theranostics	10.7150/thno.104631	2025
A synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects.	Perez M, Ntemiri A, Tan H, Harris HMB, Roager HM, Ribiere C, O'Toole PW.	Gut Microbes	10.1080/19490976.2021.1919464	2021
Variation and transmission of the human gut microbiota across multiple familial generations.	Valles-Colomer M, Bacigalupe R, Vieira-Silva S, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J, Falony G.	Nat Microbiol	10.1038/s41564-021-01021-8	2022
Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity.	Wilson BC, Vatanen T, Jayasinghe TN, Leong KSW, Derraik JGB, Albert BB, Chiavaroli V, Svirskis DM, Beck KL, Conlon CA, Jiang Y, Schierding W, Holland DJ, Cutfield WS, O'Sullivan JM.	Microbiome	10.1186/s40168-021-01060-7	2021
Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients.	Lu W, Feng Y, Jing F, Han Y, Lyu N, Liu F, Li J, Song X, Xie J, Qiu Z, Zhu T, Routy B, Routy JP, Li T, Zhu B.	Front Microbiol	10.3389/fmicb.2018.01451	2018
Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?	Tidjani Alou M, Million M, Traore SI, Mouelhi D, Khelaifia S, Bachar D, Caputo A, Delerce J, Brah S, Alhousseini D, Sokhna C, Robert C, Diallo BA, Diallo A, Parola P, Golden M, Lagier JC, Raoult D.	Front Microbiol	10.3389/fmicb.2017.00899	2017
Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China.	Li J, Hou Q, Zhang J, Xu H, Sun Z, Menghe B, Zhang H.	Front Microbiol	10.3389/fmicb.2017.00484	2017
Fecal Microbiota in Healthy Subjects Following Omnivore, Vegetarian and Vegan Diets: Culturable Populations and rRNA DGGE Profiling.	Ferrocino I, Di Cagno R, De Angelis M, Turroni S, Vannini L, Bancalari E, Rantsiou K, Cardinali G, Neviani E, Cocolin L.	PLoS One	10.1371/journal.pone.0128669	2015
Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.	Coyne MJ, Roelofs KG, Comstock LE.	BMC Genomics	10.1186/s12864-016-2377-z	2016
Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice.	Peterson DA, Planer JD, Guruge JL, Xue L, Downey-Virgin W, Goodman AL, Seedorf H, Gordon JI.	J Biol Chem	10.1074/jbc.m114.633800	2015
Longitudinal analysis of the prevalence, maintenance, and IgA response to species of the order Bacteroidales in the human gut.	Zitomersky NL, Coyne MJ, Comstock LE.	Infect Immun	10.1128/iai.01348-10	2011
Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum.	Lan PTN, Sakamoto M, Sakata S, Benno Y.	Int J Syst Evol Microbiol	10.1099/ijs.0.64517-0	2006
"Bacteroides nordii" sp. nov. and "Bacteroides salyersae" sp. nov. isolated from clinical specimens of human intestinal origin.	Song YL, Liu CX, McTeague M, Finegold SM	J Clin Microbiol	10.1128/JCM.42.12.5565-5570.2004	2004

References

#7686	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18765
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#58399	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48945
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides salyersiae (DSM 18765, ATCC BAA-997, CCUG 48945)

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