Cite this strain

"Sphingomonas humi" (KCTC 12341, JCM 16603)

BacDive ID 161834

Type strain

Culture col. no. KCTC 12341 JCM 16603

NCBI tax ID(s) 335630

Special Collections JCM KCTC

History M. Y. Kim PB323.

Links

"Sphingomonas humi" JCM 16603 is a bacterium that was isolated from Soil near a pond on the campus of KAIST in Daejeon.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232828

JCM 16603,KCTC 12341

@ref 20215

Last LPSN update 2026-02-09 11:39:15

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species "Sphingomonas humi"

Full scientific name Sphingomonas humi Yi et al. 2010

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil near a pond on the campus of KAIST in Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB220146 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	208
Soil Samples	347
Animal Samples	699
Plant Samples	160
Total Samples	1414

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953672v1 assembly for Sphingomonas humi JCM 16603	contig	GCA_039536725	335630	77.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Sphingomonas humi gene for 16S rRNA, partial sequence, strain: PB323	AB220146	1419		335630

GC content

@ref	GC-content (mol%)	Method
67770	69	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas humi sp. nov., isolated from soil.	Yi TH, Han CK, Srinivasan S, Lee KJ, Kim MK	J Microbiol	10.1007/s12275-010-0011-3	2010
Phylogeny	Sphingomonas lacus sp. nov., an astaxanthin-dideoxyglycoside-producing species isolated from soil near a pond.	Kim JH, Kim SH, Kim KH, Lee PC	Int J Syst Evol Microbiol	10.1099/ijs.0.000337	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Sphingomonas humi" (KCTC 12341, JCM 16603)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039536725

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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