Name: Sphingomonas humi JCM 16603
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161834

Type strain:

Species: Sphingomonas humi

Culture col. no.: JCM 16603, KCTC 12341

Strain history: M. Y. Kim PB323.

NCBI tax ID(s): 335630 (species)

Special Collections

JCM
KCTC

Section

When using BacDive for research please cite our paper

Sphingomonas humi JCM 16603 is a mesophilic bacterium that was isolated from Soil near a pond on the campus of KAIST in Daejeon.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	"Sphingomonas humi"
	Full Scientific Name (LPSN)	Sphingomonas humi Yi et al. 2010

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil near a pond on the campus of KAIST in Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB220146 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	208
Soil Samples	347
Animal Samples	699
Plant Samples	160
Total Samples	1414

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas humi gene for 16S rRNA, partial sequence, strain: PB323	AB220146	1419	GenBank ENA	335630 tax ID

[Ref.: #67770]

GC-content

69 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16603, KCTC 12341

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas humi sp. nov., isolated from soil.	Yi TH, Han CK, Srinivasan S, Lee KJ, Kim MK	J Microbiol	10.1007/s12275-010-0011-3	2010	*
Phylogeny	Sphingomonas lacus sp. nov., an astaxanthin-dideoxyglycoside-producing species isolated from soil near a pond.	Kim JH, Kim SH, Kim KH, Lee PC	Int J Syst Evol Microbiol	10.1099/ijs.0.000337	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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