Pelagibacterium luteolum (CGMCC 1.10267, CELMS EEUT 1C1627, JCM 16552)

Name: Pelagibacterium luteolum (CGMCC 1.10267, CELMS EEUT 1C1627, JCM 16552)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161807

Type strain

Culture col. no. CGMCC 1.10267 CELMS EEUT 1C1627 JCM 16552

NCBI tax ID(s) 440168

Special Collections JCM

History JCM <-- X.-W. Xu 1_C16_27 <-- E. Vedler (Tartu Univ., Estonia).

Links

Pelagibacterium luteolum JCM 16552 is a bacterium that was isolated from Semi-coke sample collected from north-eastern Estonia.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393472

JCM 16552

@ref 20215

Last LPSN update 2026-05-29 08:44:46

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Devosiaceae

Genus Pelagibacterium

Species Pelagibacterium luteolum

Full scientific name Pelagibacterium luteolum Xu et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.224
125438	negative	95.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.931

Spore formation

@ref	Spore formation	Confidence
125438		90.314
125439		96.023

Observation

67770

Observationquinones: Q-10, Q-9

Isolation, sampling and environmental information

Isolation

67770

Sample typeSemi-coke sample collected from north-eastern Estonia

Taxonmaps

69479

Global distribution of 16S sequence EF540455 (>99% sequence identity) for Pelagibacterium luteolum subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	15
Animal Samples	10
Plant Samples	13
Total Samples	49

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2617270882 annotated assembly for Pelagibacterium luteolum CGMCC 1.10267	scaffold	GCA_900100665	440168.4	2617270882	440168	68.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pelagibacterium luteolum strain 1_C16_27 16S ribosomal RNA gene, partial sequence	EF540455	1408		440168

GC content

@ref	GC-content (mol%)	Method
67770	58.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2617270882 annotated assembly for Pelagibacterium luteolum CGMCC 1.10267
BV-BRC: 440168.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.93	no
125439	motility	BacteriaNetⓘ	no	63.59	no
125439	gram_stain	BacteriaNetⓘ	negative	93.22	no
125439	spore_formation	BacteriaNetⓘ	no	96.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pelagibacterium luteolum strain CGMCC 1.10267
PATRIC: 440168.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	no	93.48	no
125438	spore-forming	spore-formingⓘ	no	90.31	no
125438	aerobic	aerobicⓘ	yes	85.47	no
125438	thermophilic	thermophileⓘ	no	94.23	yes
125438	flagellated	motile2+ⓘ	yes	71.52	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Pelagibacterium flavum sp. nov., Isolated from Soil Sample.	Chen XM, Yang ZZ, He SR, Xiong LS, Yuan Q, Zuo SY, Jiang CL, Jiang Y.	Curr Microbiol	10.1007/s00284-023-03583-8	2024
Phylogeny	Pelagibacterium halotolerans gen. nov., sp. nov. and Pelagibacterium luteolum sp. nov., novel members of the family Hyphomicrobiaceae.	Xu XW, Huo YY, Wang CS, Oren A, Cui HL, Vedler E, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.023325-0	2010
Phylogeny	Pelagibacterium xiamenense sp. nov., isolated from intertidal sediment.	He Y, Lyu L, Dong C, Wang W, Yu Z, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005462	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pelagibacterium luteolum (CGMCC 1.10267, CELMS EEUT 1C1627, JCM 16552)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900100665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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