Name: Nocardioides sp. JCM 16518
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161801

Type strain:

Species: Nocardioides sp.

Culture col. no.: JCM 16518

Strain history: K. Satsuma DN36.

NCBI tax ID(s): 652434 (species)

Other strains from Nocardioides sp.

Section

Nocardioides sp. JCM 16518 is a mesophilic, Gram-positive bacterium that was isolated from Paddy field soil.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Full Scientific Name (LPSN)	Nocardioides Prauser 1976 (Approved Lists 1980)

	Synonym	Marmoricola
	Synonym	Pimelobacter

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.72

[Ref.: #69480]	Motility	no Confidence in %90.442

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Paddy field soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tsukubamirai, Ibaraki Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardioides sp. DN36 gene for 16S rRNA, partial sequence	AB508351	1454	ENA	652434 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardioides sp. DN36 JCM 16518	GCA_001312705	contig	GenBank	652434 tax ID
[Ref.: #66792]	Nocardioides sp. DN36 strain JCM 16518	652434.3	wgs	PATRIC	652434 tax ID	*
[Ref.: #66792]	Nocardioides sp. JCM 16518	2681813018	draft	JGI IMG/M	652434 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardioides sp. DN36 strain JCM 16518 PATRIC: 652434.3
[Ref.: #69481]	spore-forming	no	78	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides sp. DN36 strain JCM 16518 PATRIC: 652434.3
[Ref.: #69480]	gram-positive	yes	90.02	no
[Ref.: #69480]	anaerobic	no	97.069	no
[Ref.: #69480]	halophile	no	94.944	no
[Ref.: #69480]	spore-forming	no	91.874	no
[Ref.: #69480]	glucose-util	yes	86.037	no
[Ref.: #69480]	thermophile	no	98.987	yes
[Ref.: #69480]	flagellated	no	98.949	no
[Ref.: #69480]	motile	no	95.155	no
[Ref.: #69480]	aerobic	yes	94.168	no
[Ref.: #69480]	glucose-ferment	no	86.482	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16518

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Nocardioides sp. DN36 strain JCM 16518

Nocardioides sp. DN36 strain JCM 16518

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