Name: Gordonibacter urolithinfaciens JCM 16058
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161712

Type strain:

Species: Gordonibacter urolithinfaciens

Culture col. no.: JCM 16058, KCTC 15204

Strain history: M. Hattori CAT-2.

NCBI tax ID(s): 1335613 (species)

Other strains from Gordonibacter urolithinfaciens

G. urolithinfaciens DSM 27213, CCUG 64261, KCTC 15440, ... (type strain)

Section

Gordonibacter urolithinfaciens JCM 16058 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Eggerthellales*
	Family	*Eggerthellaceae*
	Genus	*Gordonibacter*
	Species	**Gordonibacter urolithinfaciens**
	Full Scientific Name (LPSN)	Gordonibacter urolithinfaciens Selma et al. 2014

Synonym

Gordonibacter faecihominis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6, MMK-6, DMMK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF785806 (>99% sequence identity) for Gordonibacter urolithinfaciens subclade from Microbeatlas

Aquatic Samples	472
Soil Samples	84
Animal Samples	23871
Plant Samples	49
Total Samples	24476

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gordonibacter faecihominis strain CAT-2 16S ribosomal RNA gene, partial sequence	KF785806	1418	ENA	1335613 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gordonibacter urolithinfaciens JCM 16058	GCA_003788985	contig	GenBank	1335613 tax ID
[Ref.: #66792]	Gordonibacter faecihominis strain JCM 16058	1432309.3	wgs	PATRIC	1335613 tax ID	*

[Ref.: #67770]

GC-content

68.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gordonibacter faecihominis strain JCM 16058 PATRIC: 1432309.3
[Ref.: #69480]	motile	no	92.367	no
[Ref.: #69480]	gram-positive	yes	87.471	no
[Ref.: #69480]	anaerobic	yes	98.509	no
[Ref.: #69480]	halophile	no	85.896	no
[Ref.: #69480]	spore-forming	no	88.455	no
[Ref.: #69480]	thermophile	no	99.708	no
[Ref.: #69480]	glucose-util	yes	61.222	no
[Ref.: #69480]	aerobic	no	95.924	no
[Ref.: #69480]	flagellated	no	98.384	no
[Ref.: #69480]	glucose-ferment	no	59.106	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16058, KCTC 15204

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Type Strains of Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola,Slackia equolifaciens, Slackia faecicanis, and Slackia isoflavoniconvertens.	Danylec N, Stoll DA, Dotsch A, Huch M	Microbiol Resour Announc	10.1128/MRA.01532-18	2019	*
Phylogeny	Gordonibacter faecihominis sp. nov., isolated from human faeces.	Jin JS, Lee KC, Park IS, Kim KK, Ahn JS, Benno Y, Hattori M, Lee JS	Antonie Van Leeuwenhoek	10.1007/s10482-014-0212-6	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Gordonibacter faecihominis strain JCM 16058

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