Name: Mediterraneibacter faecis JCM 15917
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161697

Type strain:

Species: Mediterraneibacter faecis

Culture col. no.: JCM 15917, KCTC 5757

Strain history: J.-W. Bae Eg2.

NCBI tax ID(s): 592978 (species)

Section

Mediterraneibacter faecis JCM 15917 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Mediterraneibacter*
	Species	**Mediterraneibacter faecis**
	Full Scientific Name (LPSN)	Mediterraneibacter faecis (Kim et al. 2011) Togo et al. 2019

Synonym

Ruminococcus faecis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence FJ611794 (>99% sequence identity) for Mediterraneibacter faecis subclade from Microbeatlas

Aquatic Samples	610
Soil Samples	163
Animal Samples	41124
Plant Samples	49
Total Samples	41946

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ruminococcus faecis JCM 15917 strain Eg2 16S ribosomal RNA gene, partial sequence	FJ611794	1404	ENA	1298596 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Ruminococcus] faecis JCM 15917	GCA_001312505	contig	GenBank	1298596 tax ID
[Ref.: #66792]	Ruminococcus faecis JCM 15917	1298596.3	wgs	PATRIC	1298596 tax ID	*
[Ref.: #66792]	Mediterraneibacter faecis JCM 15917	2734481904	draft	JGI IMG/M	1298596 tax ID	*

[Ref.: #67770]

GC-content

43.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruminococcus faecis JCM 15917 PATRIC: 1298596.3
[Ref.: #69480]	motile	no	91.119	no
[Ref.: #69480]	gram-positive	yes	89.075	no
[Ref.: #69480]	anaerobic	yes	99.999	no
[Ref.: #69480]	aerobic	no	99.408	no
[Ref.: #69480]	halophile	no	80.646	no
[Ref.: #69480]	spore-forming	no	73.942	no
[Ref.: #69480]	thermophile	no	97.864	no
[Ref.: #69480]	glucose-util	yes	90.152	no
[Ref.: #69480]	flagellated	no	90.953	no
[Ref.: #69480]	glucose-ferment	yes	79.341	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 15917, KCTC 5757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.	Togo AH, Diop A, Bittar F, Maraninchi M, Valero R, Armstrong N, Dubourg G, Labas N, Richez M, Delerce J, Levasseur A, Fournier PE, Raoult D, Million M	Antonie Van Leeuwenhoek	10.1007/s10482-018-1104-y	2018	*
Phylogeny	Ruminococcus faecis sp. nov., isolated from human faeces.	Kim MS, Roh SW, Bae JW	J Microbiol	10.1007/s12275-011-0505-7	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Ruminococcus faecis JCM 15917

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