Name: Thermaerobacter composti JCM 15650
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161614

Type strain:

Species: Thermaerobacter composti

Culture col. no.: JCM 15650, ATCC BAA-1731

Strain history: S. Yabe Ni80.

NCBI tax ID(s): 1294259 (strain), 554949 (species)

Special Collections

Section

Thermaerobacter composti JCM 15650 is a spore-forming, thermophilic bacterium that was isolated from Food sludge compost.

spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Thermaerobacter*
	Species	**Thermaerobacter composti**
	Full Scientific Name (LPSN)	Thermaerobacter composti Yabe et al. 2010

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	70 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Food sludge compost
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB454087 (>99% sequence identity) for Thermaerobacter composti subclade from Microbeatlas

Aquatic Samples	84
Soil Samples	355
Animal Samples	128
Plant Samples	303
Total Samples	870

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermaerobacter composti gene for 16S ribosomal RNA, partial sequence	AB454087	1566	GenBank ENA	1294259 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermaerobacter composti JCM 15650	GCA_001311965	contig	GenBank ENA	1294259 tax ID
[Ref.: #66792]	Thermaerobacter composti JCM 15650	1294259.8	wgs	PATRIC	1294259 tax ID	*
[Ref.: #66792]	Thermaerobacter composti JCM 15650	2728369702	draft	JGI IMG/M	1294259 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermaerobacter composti JCM 15650 PATRIC: 1294259.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermaerobacter composti JCM 15650 PATRIC: 1294259.8
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	54.972	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	67.975	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.679	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	55.492	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	58.278	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	73.071	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 15650, ATCC BAA-1731

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost.	Yabe S, Kato A, Hazaka M, Yokota A	J Gen Appl Microbiol	10.2323/jgam.55.323	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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