Name: Bacteroides gallinarum C35
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1616

Type strain:

Species: Bacteroides gallinarum

Strain Designation: C35

Culture col. no.: DSM 18171, JCM 13658, CCUG 55423

Strain history: M. Sakamoto <-- P. T. N. Lan C35.

NCBI tax ID(s): 1121096 (strain), 376806 (species)

SI-ID 294003

JCM 13658, DSM 18171, CCUG 54638, CCUG 55423

Other strains from Bacteroides gallinarum

B. gallinarum JCM 13659

Section

Bacteroides gallinarum C35 is an anaerobe, mesophilic bacterium that was isolated from chicken caecum.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides gallinarum**
	Full Scientific Name (LPSN)	Bacteroides gallinarum Lan et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #69480]	Motility	no Confidence in %96.608

[Ref.: #60583]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7409]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #7409]

Culture medium growth

[Ref.: #7409]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7409]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7409]	growth	37 °C
[Ref.: #60583]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7409]	Temperature range	mesophilic
[Ref.: #60583]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7409]	Oxygen tolerance	anaerobe
[Ref.: #60583]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.35

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

[Ref.: #67770]

Observation

quinones: MK-10, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7409]	12230	-	-	-	+	-	+	+	+	-	+	+	-	+	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7409]	Sample type/isolated from	chicken caecum
[Ref.: #7409]	Country	Japan
[Ref.: #7409]	Country ISO 3 Code	JPN
[Ref.: #7409]	Continent	Asia

[Ref.: #60583]	Sample type/isolated from	Chicken cecum
[Ref.: #60583]	Country	Japan
[Ref.: #60583]	Country ISO 3 Code	JPN
[Ref.: #60583]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Chicken cecum
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body-Site	#Gastrointestinal tract	#Large intestine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB253732 (>99% sequence identity) for Bacteroides gallinarum subclade from Microbeatlas

Aquatic Samples	66
Soil Samples	44
Animal Samples	3909
Plant Samples	4
Total Samples	4023

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7409]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7409]	Bacteroides gallinarum gene for 16S ribosomal RNA, partial seuqnece, strain: JCM 13658	AB253732	1458	ENA	376806 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides gallinarum DSM 18171 = JCM 13658	GCA_000374365	scaffold	GenBank	1121096 tax ID
[Ref.: #67770]	Bacteroides gallinarum DSM 18171 = JCM 13658	GCA_000613665	contig	GenBank	1121096 tax ID
[Ref.: #66792]	Bacteroides gallinarum DSM 18171	1121096.3	wgs	PATRIC	1121096 tax ID	*
[Ref.: #66792]	Bacteroides gallinarum JCM 13658	1236491.3	wgs	PATRIC	1121096 tax ID	*
[Ref.: #66792]	Bacteroides gallinarum JCM 13658	2585427862	draft	JGI IMG/M	1121096 tax ID	*
[Ref.: #66792]	Bacteroides gallinarum DSM 18171	2519899680	draft	JGI IMG/M	1121096 tax ID	*

[Ref.: #7409]	GC-content	46.7 mol%
[Ref.: #67770]	GC-content	47 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides gallinarum DSM 18171 = JCM 13658 DSM 18171 NCBI: GCA_000374365.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides gallinarum DSM 18171 PATRIC: 1121096.3
[Ref.: #69480]	motile	no	93.29	no
[Ref.: #69480]	flagellated	no	97.168	no
[Ref.: #69480]	gram-positive	no	96.429	no
[Ref.: #69480]	anaerobic	yes	99.157	yes
[Ref.: #69480]	aerobic	no	98.418	yes
[Ref.: #69480]	halophile	no	92.856	no
[Ref.: #69480]	spore-forming	no	92.216	no
[Ref.: #69480]	thermophile	no	98.931	no
[Ref.: #69480]	glucose-util	yes	89.858	no
[Ref.: #69480]	glucose-ferment	yes	73.863	no

Availability in culture collections External links

[Ref.: #7409]

Culture collection no.

DSM 18171, JCM 13658, CCUG 55423

[Ref.: #71261]

SI-ID 294003

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum.	Lan PTN, Sakamoto M, Sakata S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64517-0	2006	*

References

#7409

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18171

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#60583 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55423

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71261

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294003.1 )

* These data were automatically processed and therefore are not curated

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Bacteroides gallinarum DSM 18171 = JCM 13658 DSM 18171

Bacteroides gallinarum DSM 18171

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