Name: Thiocapsa sp. JCM 15485
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161595

Type strain:

Species: Thiocapsa sp.

Culture col. no.: JCM 15485

Strain history: J. Schott KS1.

NCBI tax ID(s): 2024551 (species)

Section

Thiocapsa sp. JCM 15485 is a psychrophilic bacterium that was isolated from Sewage sludge of the municipal sewage treatment plant.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiocapsa*
	Full Scientific Name (LPSN)	Thiocapsa Winogradsky 1888 (Approved Lists 1980)

	Synonym	Amoebobacter
	Synonym	"Rhodothece"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	20 °C

[Ref.: #67770]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sewage sludge of the municipal sewage treatment plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	Konstanz
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence EF581005 (>99% sequence identity) for Thiocapsa sp. from Microbeatlas

Aquatic Samples	65
Soil Samples	4
Animal Samples	2
Plant Samples	1
Total Samples	72

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thiocapsa sp. KS1 gene for 16S ribosomal RNA, partial sequence	AB627083	1490	ENA	610332 tax ID
[Ref.: #67770]	Thiocapsa sp. KS1 16S ribosomal RNA gene, partial sequence	EF581005	1359	ENA	610332 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 15485

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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