Virgibacillus siamensis (TISTR 1957, PCU 312, JCM 15395)

Name: Virgibacillus siamensis (TISTR 1957, PCU 312, JCM 15395)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161588

Type strain

Culture col. no. TISTR 1957 PCU 312 JCM 15395

NCBI tax ID(s) 480071

Special Collections JCM

History JCM <-- N. Chamroensaksri and S. Tanasupawat; Chulalongkorn Univ., Thailand; MS3-4.

Links

Virgibacillus siamensis JCM 15395 is a bacterium that was isolated from Fermented fish from a market in Mahasarakram.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 359521

JCM 15395

@ref 20215

Last LPSN update 2026-05-29 08:44:43

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Virgibacillus

Species Virgibacillus siamensis

Full scientific name Virgibacillus siamensis Tanasupawat et al. 2011

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.103

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
67770	Fermented fish (pla-ra) from a market in Mahasarakram	pla-ra	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB365482 (>99% sequence identity) for Virgibacillus siamensis from Microbeatlas

Aquatic Samples	5
Soil Samples	24
Animal Samples	48
Plant Samples	13
Total Samples	90

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268498v1 assembly for Virgibacillus siamensis TISTR 1957	scaffold	GCA_042684985	480071	69.63
124043	ASM3952260v1 assembly for Virgibacillus siamensis JCM 15395	scaffold	GCA_039522605	480071	66.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Virgibacillus siamensis gene for 16S rRNA, partial sequence, strain: MS3-4	AB365482	1524		480071

GC content

@ref	GC-content (mol%)	Method
67770	38	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268498v1 assembly for Virgibacillus siamensis TISTR 1957
NCBI: GCA_042684985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.10	no
125439	gram_stain	BacteriaNetⓘ	variable	70.15	no
125439	motility	BacteriaNetⓘ	yes	80.76	no
125439	spore_formation	BacteriaNetⓘ	yes	85.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali.	Konate S, Camara A, Lo CI, Tidjani Alou M, Hamidou Togo A, Niare S, Armstrong N, Djimde A, Thera MA, Fenollar F, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2021.100890	2021
Genetics	Virgibacillus ihumii sp. nov., a new bacterium isolated from the stool of healthy African children.	Camara A, Konate S, Lo CI, Kuete E, Sarr M, Amsrtong N, Niare S, Thera MA, Fenollar F, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2020.100790	2020
Phylogeny	Identification of moderately halophilic bacteria from Thai fermented fish ( pla-ra ) and proposal of Virgibacillus siamensis sp. nov.	Tanasupawat S, Chamroensaksri N, Kudo T, Itoh T	J Gen Appl Microbiol	10.2323/jgam.56.369	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Virgibacillus siamensis (TISTR 1957, PCU 312, JCM 15395)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042684985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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