Name: Streptomyces cinnamoneus DSM 41675
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16156

Type strain:

Species: Streptomyces cinnamoneus

Culture col. no.: DSM 41675, ATCC 21532, DSM 41493, IFO 13823, JCM 4934, KCC S-0934, LMG 20324, NBRC 13823

Strain history: KCC S-0934 <-- Kyowa Hakko Kogyo Co., Ltd.; KY 11464 <-- ATCC 21532 <-- Fujisawa Pharm. Co., Ltd.; WS 4545.

NCBI tax ID(s): 53446 (species)

SI-ID 37570

ATCC 21532, DSM 41675, DSM 41493, IFO 13823, JCM 4934, NBRC 13823, LMG 20324

Section

Streptomyces cinnamoneus DSM 41675 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces cinnamoneus**
	Full Scientific Name (LPSN)	Streptomyces cinnamoneus (Benedict et al. 1952) Witt and Stackebrandt 1991

	Synonym	Streptomyces sapporonensis
	Synonym	"Streptomyces* cinnamoneus"*
	Synonym	"Streptomyces* griseoverticillatus"*
	Synonym	Streptoverticillium griseoverticillatum
	Synonym	Streptomyces hachijoensis
	Synonym	Streptoverticillium cinnamoneum
	Synonym	Streptoverticillium hachijoense
	Synonym	Streptoverticillium sapporonense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.902

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10458]	Name of produced compound	bicyclomycin
[Ref.: #10458]	Name of produced compound	diaza-oxa-bicyclodecane

	Metabolite production	Metabolite	Production
[Ref.: #67770]		bicyclomycin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10458]	Sample type/isolated from	soil
[Ref.: #10458]	Geographic location (country and/or sea, region)	Hokkaido, Sapporo
[Ref.: #10458]	Country	Japan
[Ref.: #10458]	Country ISO 3 Code	JPN
[Ref.: #10458]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sapporo, Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10458]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces sapporonensis 16S rRNA gene, type strain LMG 20324	AJ781378	1476	ENA	53446 tax ID
[Ref.: #67770]	Streptomyces cinnamoneus NBRC 13823 gene for 16S rRNA, partial sequence	AB184508	1464	ENA	53446 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces cinnamoneus ATCC 21532	GCA_002727115	contig	GenBank	53446 tax ID
[Ref.: #67770]	Streptomyces cinnamoneus DSM 41675	GCA_002939475	contig	GenBank	53446 tax ID
[Ref.: #66792]	Streptomyces cinnamoneus strain ATCC 21532	53446.8	wgs	PATRIC	53446 tax ID	*
[Ref.: #66792]	Streptomyces cinnamoneus strain DSM 41675	53446.9	wgs	PATRIC	53446 tax ID	*
[Ref.: #66792]	Streptomyces cinnamoneus DSM 41675	2866048730	draft	JGI IMG/M	53446 tax ID	*
[Ref.: #66792]	Streptomyces cinnamoneus ATCC 21532	2916777264	draft	JGI IMG/M	97401 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces cinnamoneus strain DSM 41675 PATRIC: 53446.9
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces cinnamoneus strain ATCC 21532 PATRIC: 53446.8
[Ref.: #69480]	gram-positive	yes	88.949	no
[Ref.: #69480]	anaerobic	no	99.121	no
[Ref.: #69480]	halophile	no	95.207	no
[Ref.: #69480]	spore-forming	yes	94.58	no
[Ref.: #69480]	glucose-util	yes	89.881	no
[Ref.: #69480]	thermophile	no	96.83	no
[Ref.: #69480]	aerobic	yes	91.781	no
[Ref.: #69480]	motile	no	93.945	no
[Ref.: #69480]	flagellated	no	98.29	no
[Ref.: #69480]	glucose-ferment	no	90.152	no

Availability in culture collections External links

[Ref.: #10458]

Culture collection no.

DSM 41675, ATCC 21532, DSM 41493, IFO 13823, JCM 4934, KCC S-0934, LMG 20324, NBRC 13823

[Ref.: #85221]

SI-ID 37570

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Discovery and Biosynthesis of the Antibiotic Bicyclomycin in Distantly Related Bacterial Classes.	Vior NM, Lacret R, Chandra G, Dorai-Raj S, Trick M, Truman AW	Appl Environ Microbiol	10.1128/AEM.02828-17	2018	*

References

#10458

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85221

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37570.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces cinnamoneus strain DSM 41675

Streptomyces cinnamoneus strain ATCC 21532

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