Name: Unidentified actinobacterium JCM 14692
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161530

Type strain:

Species: Unidentified actinobacterium

Culture col. no.: JCM 14692

Strain history: K. Minamisawa B27 (Corynebacterium-like bacterium).

Other strains from Unidentified actinobacterium

U. actinobacterium JCM 18065
U. actinobacterium JCM 28296

Section

Unidentified actinobacterium JCM 14692 is a mesophilic prokaryote that was isolated from Stem of wild rice, Oryza punctata W1564.

mesophilic
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

[Ref.: #67770]	Phylum	Not assigned to order
[Ref.: #67770]	Class	Not assigned to order
[Ref.: #67770]	Order	Not assigned to order
[Ref.: #67770]	Family	Not assigned to family
[Ref.: #67770]	Genus	Not assigned to family
[Ref.: #67770]	Species	Unidentified actinobacterium
[Ref.: #67770]	Full Scientific Name	Unidentified actinobacterium

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Stem of wild rice, Oryza punctata W1564
[Ref.: #67770]	Host species	Oryza punctata
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB537176 (>99% sequence identity) for Herbiconiux from Microbeatlas

Aquatic Samples	34
Soil Samples	200
Animal Samples	103
Plant Samples	40
Total Samples	377

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium-like bacterium B27 gene for 16S ribosomal RNA	AB027703	539	ENA	95617 tax ID
[Ref.: #67770]	Microbacteriaceae bacterium JCM 14692 gene for 16S ribosomal RNA, partial sequence	AB537176	1456	ENA	698330 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium-like bacterium B27	GCA_000333435	contig	GenBank	95617 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium-like bacterium B27 B27 NCBI: GCA_000333435.1
[Ref.: #69480]	motile	no	89.305	no
[Ref.: #69480]	flagellated	no	98.131	no
[Ref.: #69480]	gram-positive	yes	89.272	no
[Ref.: #69480]	anaerobic	no	99.334	no
[Ref.: #69480]	aerobic	yes	94.053	no
[Ref.: #69480]	halophile	no	94.893	no
[Ref.: #69480]	spore-forming	no	93.493	no
[Ref.: #69480]	thermophile	no	99.621	yes
[Ref.: #69480]	glucose-util	yes	85.431	no
[Ref.: #69480]	glucose-ferment	no	91.359	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14692

References
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Unidentified actinobacterium in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Corynebacterium-like bacterium B27 B27

Change proposal

Change proposal