Unidentified actinobacterium (JCM 14692)

Name: Unidentified actinobacterium (JCM 14692)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161530

Type strain

Culture col. no. JCM 14692

Special Collections JCM

History K. Minamisawa B27 (Corynebacterium-like bacterium).

Unidentified actinobacterium JCM 14692 is a prokaryote that was isolated from Stem of wild rice, Oryza punctata W1564.

genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

JCM 14692

@ref 67770

Phylum Not assigned to order

Class Not assigned to order

Order Not assigned to order

Family Not assigned to family

Genus Not assigned to family

Species Unidentified actinobacterium

Full scientific name Unidentified actinobacterium

Type strain no

BacDive ID	Other strains from Unidentified actinobacterium (2)	Type strain
162179	U. actinobacterium JCM 18065
163484	U. actinobacterium JCM 28296

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.335
125439	obligate aerobe	98.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Stem of wild rice, Oryza punctata W1564	Oryza punctata

Taxonmaps

69479

Global distribution of 16S sequence AB537176 (>99% sequence identity) for Herbiconiux from Microbeatlas

Aquatic Samples	34
Soil Samples	200
Animal Samples	103
Plant Samples	40
Total Samples	377

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM33343v1 assembly for Corynebacterium-like bacterium B27	contig	GCA_000333435	95617.3	2590828100	95617

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Corynebacterium-like bacterium B27 gene for 16S ribosomal RNA	AB027703	539		95617
67770	Microbacteriaceae bacterium JCM 14692 gene for 16S ribosomal RNA, partial sequence	AB537176	1456		698330

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium-like bacterium B27
NCBI: GCA_000333435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	67.40	no
125439	motility	BacteriaNetⓘ	no	83.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium-like bacterium B27 B27
NCBI: GCA_000333435.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.77	no
125438	anaerobic	anaerobicⓘ	no	97.18	no
125438	aerobic	aerobicⓘ	yes	90.34	no
125438	spore-forming	spore-formingⓘ	no	76.86	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	81.00	no

Literature

References

#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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