Name: Bartonella tamiae JCM 14580
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161502

Type strain:

Species: Bartonella tamiae

Culture col. no.: JCM 14580, ATCC BAA-1343, NCTC 13398

Strain history: M. Kosoy Th239.

NCBI tax ID(s): 373638 (species)

Other strains from Bartonella tamiae

B. tamiae CCUG 53262

Section

Bartonella tamiae JCM 14580 is a mesophilic bacterium that was isolated from 38-year-old male patient with fatigue, myalgia, a headache, a maculopapular rash and a fever.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	"Bartonella tamiae"
	Full Scientific Name (LPSN)	Bartonella tamiae Kosoy et al. 2008

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	35 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	38-year-old male patient with fatigue, myalgia, a headache, a maculopapular rash and a fever
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bartonella tamiae strain Th239 16S ribosomal RNA gene, partial sequence	DQ395176	1246	ENA	373638 tax ID
[Ref.: #67770]	Bartonella tamiae strain Th239 16S-23S ribosomal RNA intergenic spacer, partial sequence	DQ395180	415	ENA	373638 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bartonella tamiae Th239	GCA_000278275	scaffold	GenBank	1094558 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bartonella tamiae Th239 Th239 NCBI: GCA_000278275.1
[Ref.: #69480]	motile	no	93.997	no
[Ref.: #69480]	flagellated	no	96.763	no
[Ref.: #69480]	gram-positive	no	98.002	no
[Ref.: #69480]	anaerobic	no	95.209	no
[Ref.: #69480]	aerobic	yes	62.337	no
[Ref.: #69480]	halophile	no	65.641	no
[Ref.: #69480]	spore-forming	no	96.982	no
[Ref.: #69480]	thermophile	no	86.749	yes
[Ref.: #69480]	glucose-util	yes	53.222	no
[Ref.: #69480]	glucose-ferment	no	79.992	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14580, ATCC BAA-1343, NCTC 13398

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Bartonella tamiae in external resources:
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Bartonella tamiae Th239 Th239

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