Halococcus qingdaonensis (CGMCC 1.4243, JCM 13587)

Name: Halococcus qingdaonensis (CGMCC 1.4243, JCM 13587)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161382

Type strain

Culture col. no. CGMCC 1.4243 JCM 13587

NCBI tax ID(s) 224402

Special Collections JCM

History JCM <-- G.-G. Guo and Q.-F. Wang CM5.

Links

Halococcus qingdaonensis JCM 13587 is an archaeon that was isolated from Crude sea-salt sample collected near Quigdao.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 297189

CGMCC 1.4243,JCM 13587

@ref 20215

Last LPSN update 2026-05-29 08:44:40

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Halococcaceae

Genus Halococcus

Species Halococcus qingdaonensis

Full scientific name Halococcus qingdaonensis Wang et al. 2007

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	93.428

Spore formation

@ref	Spore formation	Confidence
125439		94.005

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Crude sea-salt sample collected near Quigdao	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY243109 (>99% sequence identity) for Halococcus from Microbeatlas

Aquatic Samples	97
Soil Samples	14
Animal Samples	164
Plant Samples	1
Total Samples	276

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2450823v1 assembly for Halococcus qingdaonensis CGMCC 1.4243	complete	GCA_024508235	224402.3	8055545103	224402	95.83

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Halococcus qingdaonensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 13587	AB477971	1434	224402
67770	Halococcus qingdaogense 16S ribosomal RNA gene, complete sequence	AY243109	1476	224402
124043	Halococcus qingdaonensis gene for 16S rRNA, complete sequence, strain: JCM 13587.	AB663369	1474	224402

GC content

@ref	GC-content (mol%)	Method
67770	61.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2450823v1 assembly for Halococcus qingdaonensis CGMCC 1.4243
NCBI: GCA_024508235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	55.79	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.43	no
125439	motility	BacteriaNetⓘ	yes	49.24	no
125439	spore_formation	BacteriaNetⓘ	no	94.01	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halococcus qingdaonensis CGMCC 1.4243
NCBI: GCA_024508235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	74.18	no
125438	anaerobic	anaerobicⓘ	no	83.93	no
125438	aerobic	aerobicⓘ	yes	83.86	no
125438	spore-forming	spore-formingⓘ	no	86.70	no
125438	thermophilic	thermophileⓘ	no	81.87	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification of polyhydroxyalkanoates in Halococcus and other haloarchaeal species.	Legat A, Gruber C, Zangger K, Wanner G, Stan-Lotter H	Appl Microbiol Biotechnol	10.1007/s00253-010-2611-6	2010
Phylogeny	Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment.	Yim KJ, Cha IT, Whon TW, Lee HW, Song HS, Kim KN, Nam YD, Lee SJ, Bae JW, Rhee SK, Choi JS, Seo MJ, Roh SW, Kim D	Antonie Van Leeuwenhoek	10.1007/s10482-013-0054-7	2013
Phylogeny	Halococcus thailandensis sp. nov., from fish sauce in Thailand.	Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.65218-0	2007
Phylogeny	Halococcus qingdaonensis sp. nov., a halophilic archaeon isolated from a crude sea-salt sample.	Wang QF, Li W, Yang H, Liu YL, Cao HH, Dornmayr-Pfaffenhuemer M, Stan-Lotter H, Guo GQ	Int J Syst Evol Microbiol	10.1099/ijs.0.64673-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halococcus qingdaonensis (CGMCC 1.4243, JCM 13587)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024508235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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