Name: Halococcus qingdaonensis JCM 13587
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161382

Type strain:

Species: Halococcus qingdaonensis

Culture col. no.: JCM 13587, CGMCC 1.4243

Strain history: G.-G. Guo and Q.-F. Wang CM5.

NCBI tax ID(s): 224402 (species)

SI-ID 297189

CGMCC 1.4243, JCM 13587

Section

Halococcus qingdaonensis JCM 13587 is a mesophilic archaeon that was isolated from Crude sea-salt sample collected near Quigdao.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halococcaceae*
	Genus	*Halococcus*
	Species	**Halococcus qingdaonensis**
	Full Scientific Name (LPSN)	Halococcus qingdaonensis Wang et al. 2007

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Crude sea-salt sample collected near Quigdao
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY243109 (>99% sequence identity) for Halococcus from Microbeatlas

Aquatic Samples	97
Soil Samples	14
Animal Samples	164
Plant Samples	1
Total Samples	276

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halococcus qingdaonensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 13587	AB477971	1434	ENA	224402 tax ID
[Ref.: #67770]	Halococcus qingdaogense 16S ribosomal RNA gene, complete sequence	AY243109	1476	ENA	224402 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halococcus qingdaonensis CGMCC 1.4243	GCA_024508235	complete	GenBank	224402 tax ID	*

[Ref.: #67770]

GC-content

61.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halococcus qingdaonensis CGMCC 1.4243 NCBI: GCA_024508235.1
[Ref.: #69480]	flagellated	no	97.283	no
[Ref.: #69480]	gram-positive	no	95.137	no
[Ref.: #69480]	anaerobic	no	95.78	no
[Ref.: #69480]	aerobic	yes	84.077	no
[Ref.: #69480]	halophile	yes	91.834	no
[Ref.: #69480]	spore-forming	no	95.117	no
[Ref.: #69480]	motile	no	83.565	no
[Ref.: #69480]	glucose-ferment	no	86.058	no
[Ref.: #69480]	thermophile	no	84.74	no
[Ref.: #69480]	glucose-util	yes	87.044	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13587, CGMCC 1.4243

[Ref.: #113385]

SI-ID 297189

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment.	Yim KJ, Cha IT, Whon TW, Lee HW, Song HS, Kim KN, Nam YD, Lee SJ, Bae JW, Rhee SK, Choi JS, Seo MJ, Roh SW, Kim D	Antonie Van Leeuwenhoek	10.1007/s10482-013-0054-7	2013	*
Metabolism	Identification of polyhydroxyalkanoates in Halococcus and other haloarchaeal species.	Legat A, Gruber C, Zangger K, Wanner G, Stan-Lotter H	Appl Microbiol Biotechnol	10.1007/s00253-010-2611-6	2010	*
Phylogeny	Halococcus thailandensis sp. nov., from fish sauce in Thailand.	Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.65218-0	2007	*
Phylogeny	Halococcus qingdaonensis sp. nov., a halophilic archaeon isolated from a crude sea-salt sample.	Wang QF, Li W, Yang H, Liu YL, Cao HH, Dornmayr-Pfaffenhuemer M, Stan-Lotter H, Guo GQ	Int J Syst Evol Microbiol	10.1099/ijs.0.64673-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113385

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297189.1 )

* These data were automatically processed and therefore are not curated

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Halococcus qingdaonensis CGMCC 1.4243

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