Name: Streptomyces abikoensis DSM 40105
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16136

Type strain:

Species: Streptomyces abikoensis

Culture col. no.: DSM 40105, ATCC 23943, CBS 927.68, IFM 1018, IFO 12896, ISP 5105, JCM 4176, JCM 4657, NBRC 12896, RIA 1122, BCRC 13765, IMET 43690, KCTC 19043, NRRL B-2091, VKM Ac-839

Strain history: KCC S-0176 <-- IFM 1018 (T. Arai 100).

NCBI tax ID(s): 68246 (species)

SI-ID 377529

ATCC 23943, IFO 12896, DSM 40105, JCM 4176, CCRC 13765, IMET 43690, NRRL B-2091, VKM Ac-839, JCM 4657, CBS 927.68, NBRC 12896, BCRC 13765, KCTC 19043

Special Collections

Other strains from Streptomyces abikoensis

Section

Streptomyces abikoensis DSM 40105 is a bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces abikoensis**
	Full Scientific Name (LPSN)	Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991

	Synonym	Streptoverticillium luteoverticillatum
	Synonym	"Streptomyces* olivoreticuli"*
	Synonym	Streptoverticillium olivoreticulum subsp. cellulophilum
	Synonym	"Streptomyces* abikoensum"*
	Synonym	"Streptomyces* abikoensis"*
	Synonym	Streptomyces luteoverticillatus
	Synonym	Streptomyces parvisporogenes
	Synonym	Streptoverticillium abikoense
	Synonym	Streptoverticillium olivoreticuli
	Synonym	Streptoverticillium parvisporogenum
	Synonym	Streptoverticillium olivoreticuli subsp. cellulophilum
	Synonym	Streptoverticillium ehimense
	Synonym	Streptoverticillium parvisporogenes
	Synonym	Streptoverticillium olivoreticulum
	Synonym	Streptomyces ehimensis
	Synonym	Streptomyces ekimensis

Information on morphological and physiological properties Morphology

[Ref.: #69241]	Colony color	Fawn brown (8007), Nut brown (8011)
[Ref.: #69241]	Cultivation medium used	ISP 5

[Ref.: #69241]	Colony color	Clay brown (8003)
[Ref.: #69241]	Cultivation medium used	ISP 2

[Ref.: #69241]	Colony color	Beige (1001)
[Ref.: #69241]	Cultivation medium used	ISP 6

[Ref.: #69241]	Colony color	Beige (1001)
[Ref.: #69241]	Cultivation medium used	ISP 7

[Ref.: #69241]	Colony color	Grey brown (8019)
[Ref.: #69241]	Cultivation medium used	suter with tyrosine

[Ref.: #69241]	Colony color	Grey brown (8019)
[Ref.: #69241]	Cultivation medium used	suter without tyrosine

[Ref.: #69241]	Colony color	Nut brown (8011)
[Ref.: #69241]	Cultivation medium used	ISP 3

[Ref.: #69241]	Colony color	Pale brown (8025), Terra brown (8028)
[Ref.: #69241]	Cultivation medium used	ISP 4

[Ref.: #69241]	Pigment production	no
[Ref.: #69241]	Pigment name	Melanin
[Ref.: #69241]	Pigment production	yes
[Ref.: #69241]	Pigmentation color	Ochre brown (8001), sand yellow (1002), chocolate brown (8017), brown beige (1011), ivory (1014), jet black (9005), clay brown (8003)
[Ref.: #69241]	Pigment name	soluble pigment

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Platinum grey (7036), cream (9001)
[Ref.: #69241]	Medium Name (multicellularity)	ISP 2

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Cream (9001)
[Ref.: #69241]	Medium Name (multicellularity)	ISP 3

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Signal grey (7004)
[Ref.: #69241]	Medium Name (multicellularity)	ISP 4

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Telegrey 4 (7047)
[Ref.: #69241]	Medium Name (multicellularity)	ISP 5

[Ref.: #69241]	Multicellular complex forming ability	no
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Medium Name (multicellularity)	ISP 6

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Cream (9001)
[Ref.: #69241]	Medium Name (multicellularity)	ISP 7

[Ref.: #69241]	Multicellular complex forming ability	no
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69241]	Multicellular complex forming ability	yes
[Ref.: #69241]	Multicellular complex name	Aerial mycelium
[Ref.: #69241]	Multicellular complex color	Moss grey (7003), cream (9001)
[Ref.: #69241]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69241]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69241]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69241]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69241]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9316]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9316]

Culture medium growth

[Ref.: #9316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9316]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9316]	growth	28 °C
[Ref.: #18534]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9316]	Name of produced compound	heptaene
[Ref.: #9316]	Name of produced compound	viomycin complex
[Ref.: #20216]	Name of produced compound	Heptaenic antibiotic
[Ref.: #20216]	Name of produced compound	Olivomycine
[Ref.: #20216]	Name of produced compound	Viomycin
[Ref.: #67770]	Name of produced compound	Viomycin-like antibiotic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69241]		NaCl		growth	0-5	%

[Ref.: #18534]	Name of tolerated compound	Lysozyme
[Ref.: #18534]	Tolerance percentage	0.5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69241]	arabinose ChEBI	-	growth
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #69241]	cellulose ChEBI	-	growth
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69241]	fructose ChEBI	-	growth
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #69241]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69241]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69241]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #69241]	raffinose ChEBI	-	growth
[Ref.: #69241]	rhamnose ChEBI	-	growth
[Ref.: #69241]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #69241]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API 20E
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18534]	94	-	+	+	-	-	+	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69241]	3735	-	-	-	+	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69241]	5919	not determinedn.d.	+	+/-	+	+	+/-	+	+/-	+/-	+/-	+	+	+/-	+/-	+/-	+	+/-	+/-	+	+/-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18534]	Biosafety level	1	German classification
[Ref.: #9316]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces olivoreticuli subsp. olivoreticuli 16S rRNA gene, type strain LMG 20050	AJ781345	1476	GenBank ENA	284034 tax ID
[Ref.: #20218]	Streptomyces olivoreticuli subsp. olivoreticuli strain DSM 40105 16S ribosomal RNA gene, partial sequence	AY999857	1425	GenBank ENA	284034 tax ID	*
[Ref.: #20218]	Streptomyces olivoreticuli gene for 16S ribosomal RNA, partial sequence, strain: JCM 4176	D44023	120	GenBank ENA	68246 tax ID	*
[Ref.: #20218]	Streptomyces olivoreticuli gene for 16S rRNA, partial sequence, strain: NBRC 12896	AB184853	1473	GenBank ENA	68246 tax ID	*

Availability in culture collections External links

[Ref.: #9316]

Culture collection no.

DSM 40105, ATCC 23943, CBS 927.68, IFM 1018, IFO 12896, ISP 5105, JCM 4176, JCM 4657, NBRC 12896, RIA 1122, BCRC 13765, IMET 43690, KCTC 19043, NRRL B-2091, VKM Ac-839

[Ref.: #85201]

SI-ID 377529

References

#9316

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40105

#18534

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69241

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#85201

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377529.1 )

* These data were automatically processed and therefore are not curated

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