"Streptomyces abikoensis" DSM 40105 is a mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.
antibiotic compound production mesophilic 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species "Streptomyces abikoensis" |
| Full scientific name Streptomyces abikoensis corrig. Umezawa et al. 1951 |
|
Synonyms (20)
"Streptomyces abikoensum"
"Streptomyces luteoverticillatus" Streptomyces olivoreticuli Streptoverticillium olivoreticulum "Streptomyces hesseae" Streptoverticillium parvisporogenum Streptoverticillium ehimense Streptoverticillium parvisporogenes Streptomyces parvisporogenes Streptomyces ekimensis "Streptomyces olivoreticuli" Streptomyces ehimensis Streptoverticillium abikoense Streptoverticillium olivoreticuli subsp. cellulophilum Streptoverticillium olivoreticulum subsp. cellulophilum Streptoverticillium olivoreticuli "Streptomyces ehimensis" Streptoverticillium luteoverticillatum Streptomyces abikoensis Streptomyces luteoverticillatus |
| @ref | Colony color | Medium used | |
|---|---|---|---|
| 69241 | Fawn brown (8007), Nut brown (8011) | ISP 5 | |
| 69241 | Clay brown (8003) | ISP 2 | |
| 69241 | Beige (1001) | ISP 6 | |
| 69241 | Beige (1001) | ISP 7 | |
| 69241 | Grey brown (8019) | suter with tyrosine | |
| 69241 | Grey brown (8019) | suter without tyrosine | |
| 69241 | Nut brown (8011) | ISP 3 | |
| 69241 | Pale brown (8025), Terra brown (8028) | ISP 4 |
| @ref | Forms multicellular complex | Complex name | Complex color | Medium name | |
|---|---|---|---|---|---|
| 69241 | Aerial mycelium | Platinum grey (7036), cream (9001) | ISP 2 | ||
| 69241 | Aerial mycelium | Cream (9001) | ISP 3 | ||
| 69241 | Aerial mycelium | Signal grey (7004) | ISP 4 | ||
| 69241 | Aerial mycelium | Telegrey 4 (7047) | ISP 5 | ||
| 69241 | Aerial mycelium | ISP 6 | |||
| 69241 | Aerial mycelium | Cream (9001) | ISP 7 | ||
| 69241 | Aerial mycelium | suter with tyrosine | |||
| 69241 | Aerial mycelium | Moss grey (7003), cream (9001) | suter without tyrosine |
| @ref: | 69241 |
| multimedia content: | DSM_40105_image3.jpeg |
| multimedia.multimedia content: | DSM_40105_image3.jpeg |
| caption: | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69241 |
| multimedia content: | DSM_40105_image4.jpeg |
| multimedia.multimedia content: | DSM_40105_image4.jpeg |
| caption: | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9316 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | Medium recipe at MediaDive | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water | ||
| 9316 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 69241 | NaCl | positive | growth | 0-5 % |
| @ref | Compound | Percentage | |
|---|---|---|---|
| 18534 | Lysozyme | 0.5 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 69241 | 22599 ChEBI | arabinose | - | growth | |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 69241 | 62968 ChEBI | cellulose | - | growth | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 69241 | 28757 ChEBI | fructose | - | growth | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 69241 | 17234 ChEBI | glucose | + | growth | |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 69241 | 17268 ChEBI | inositol | + | growth | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 69241 | 37684 ChEBI | mannose | - | growth | |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 69241 | 16634 ChEBI | raffinose | - | growth | |
| 69241 | 26546 ChEBI | rhamnose | - | growth | |
| 69241 | 17992 ChEBI | sucrose | - | growth | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 69241 | 18222 ChEBI | xylose | - | growth |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | - | from API Coryne | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces olivoreticuli gene for 16S rRNA, partial sequence, strain: NBRC 12896 | AB184853 | 1473 | 68246 | ||
| 20218 | Streptomyces olivoreticuli subsp. olivoreticuli strain DSM 40105 16S ribosomal RNA gene, partial sequence | AY999857 | 1425 | 284034 | ||
| 20218 | Streptomyces olivoreticuli gene for 16S ribosomal RNA, partial sequence, strain: JCM 4176 | D44023 | 120 | 68246 | ||
| 67770 | Streptomyces olivoreticuli subsp. olivoreticuli 16S rRNA gene, type strain LMG 20050 | AJ781345 | 1476 | 284034 |
| #9316 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40105 |
| #18534 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69241 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive16136.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data