Name: Grimontia hollisae JCM 1284
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161271

Type strain:

Species: Grimontia hollisae

Culture col. no.: JCM 1284, ATCC 33565, CCM 3675, CDC 921-79, LMG 19871, NCTC 11641

Strain history: R. Sakazaki 82068 <-- ATCC 33565 <-- F. W. Hickman 921-79 <-- Louisiana State Health Dept., USA <-- Our Lady of the Lake Hosp., Baton Rouge, LA, USA.

NCBI tax ID(s): 673 (species)

SI-ID 40562

ATCC 33565, JCM 1284, CCM 3675, NCTC 11641, LMG 21416, LMG 19871

Special Collections

Other strains from Grimontia hollisae

Section

When using BacDive for research please cite our paper

Grimontia hollisae JCM 1284 is a mesophilic bacterium that was isolated from Stool.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Grimontia*
	Species	**Grimontia hollisae**
	Full Scientific Name (LPSN)	Grimontia hollisae (Hickman et al. 1982) Thompson et al. 2003

Synonym

Vibrio hollisae

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %97
[Ref.: #125438]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	26 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

no Confidence in %94.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Stool
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC069034 (>99% sequence identity) for Grimontia hollisae subclade from Microbeatlas

Aquatic Samples	464
Soil Samples	27
Animal Samples	432
Plant Samples	8
Total Samples	931

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Grimontia hollisae gene for 16S ribosomal RNA, partial sequence, strain: JCM 1284	LC069034	1474	GenBank ENA	673 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Grimontia hollisae NCTC11641	GCA_900450655	contig	GenBank ENA	673 tax ID	*
[Ref.: #66792]	Grimontia hollisae strain NCTC11641	673.10	wgs	PATRIC	673 tax ID	*

[Ref.: #67770]

GC-content

49.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Grimontia hollisae strain NCTC11641 PATRIC: 673.10
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.14	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.321	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	64.235	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	85.664	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Grimontia hollisae NCTC11641 NCBI: GCA_900450655
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	54.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate anaerobe	64.4

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 1284, ATCC 33565, CCM 3675, CDC 921-79, LMG 19871, NCTC 11641

[Ref.: #113328]

SI-ID 40562

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113328

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40562.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Grimontia hollisae strain NCTC11641

Grimontia hollisae NCTC11641

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