Name: Streptomyces werraensis FH 1282
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16127

Type strain:

Species: Streptomyces werraensis

Strain Designation: FH 1282, FH 3582

Culture col. no.: DSM 40745, ATCC 14424, CBS 437.67, CBS 705.72, DSM 40486, IFO 13404, ISP 5486, JCM 4860, RIA 1365, NBRC 13404, BCRC 12038, KCTC 19066, NRRL B-5317

Strain history: KCC S-0860 <-- IFO 13404 <-- SAJ <-- ISP 5486 <-- ATCC 14424 <-- Farbwerke Hoechst AG strain FH 3582.

NCBI tax ID(s): 68284 (species)

SI-ID 389316

ATCC 14424, IFO 13404, DSM 40486, JCM 4860, CCRC 12038, NRRL B-5317, CBS 437.67, CBS 705.72, NBRC 13404, DSM 40745, BCRC 12038, KCTC 19066, CGMCC 4.1935

Section

Streptomyces werraensis FH 1282 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces werraensis**
	Full Scientific Name (LPSN)	Streptomyces werraensis Wallhäusser et al. 1964 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.21

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9764]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9764]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9764]	Name of produced compound	nonactin
[Ref.: #9764]	Name of produced compound	werramycine
[Ref.: #67770]	Name of produced compound	Werramycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	nonactin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19463]	324	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184381 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	2
Soil Samples	112
Animal Samples	49
Plant Samples	3
Total Samples	166

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9764]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19463]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces werraensis gene for 16S rRNA, partial sequence	AB122711	565	ENA	68284 tax ID	*
[Ref.: #20218]	Streptomyces werraensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4860	D44411	121	ENA	68284 tax ID	*
[Ref.: #20218]	Streptomyces werraensis gene for 16S rRNA, partial sequence, strain: NBRC 13404	AB184381	1474	ENA	68284 tax ID	*
[Ref.: #20218]	Streptomyces werraensis strain NRRL B-5317T 16S ribosomal RNA gene, partial sequence	DQ442558	1478	ENA	68284 tax ID	*
[Ref.: #20218]	Streptomyces werraensis 16S ribosomal RNA gene, partial sequence	KC355416	876	ENA	68284 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces werraensis JCM 4860	GCA_014656175	scaffold	GenBank	68284 tax ID	*
[Ref.: #66792]	Streptomyces werraensis strain JCM 4860	68284.3	wgs	PATRIC	68284 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces werraensis strain JCM 4860 PATRIC: 68284.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces werraensis JCM 4860 NCBI: GCA_014656175.1
[Ref.: #69480]	flagellated	no	97.799	no
[Ref.: #69480]	gram-positive	yes	91.137	no
[Ref.: #69480]	anaerobic	no	99.337	no
[Ref.: #69480]	aerobic	yes	94.005	no
[Ref.: #69480]	halophile	no	92.242	no
[Ref.: #69480]	spore-forming	yes	96.086	no
[Ref.: #69480]	glucose-util	yes	88.576	no
[Ref.: #69480]	thermophile	no	97.909	no
[Ref.: #69480]	motile	no	94.144	no
[Ref.: #69480]	glucose-ferment	no	90.043	no

Availability in culture collections External links

[Ref.: #9764]

Culture collection no.

DSM 40745, ATCC 14424, CBS 437.67, CBS 705.72, DSM 40486, IFO 13404, ISP 5486, JCM 4860, RIA 1365, NBRC 13404, BCRC 12038, KCTC 19066, NRRL B-5317

[Ref.: #85192]

SI-ID 389316

References

#9764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40745

#19463

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85192

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389316.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces werraensis strain JCM 4860

Streptomyces werraensis JCM 4860

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