Name: Thauera sp. JCM 12309
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161213

Type strain:

Species: Thauera sp.

Culture col. no.: JCM 12309

Strain history: N. Kato DNT-1.

NCBI tax ID(s): 167065 (species)

SI-ID 231872

JCM 12309

Other strains from Thauera sp.

T. sp. PN-1, DSM 6505, ATCC 43374
T. sp. O, DSM 14973
T. sp. 27, DSM 14974
T. sp. 28, DSM 14975
T. sp. 1917, DSM 14976

Section

Thauera sp. JCM 12309 is a mesophilic, motile bacterium that was isolated from Anaerobic sludge from a wastewater treatment plant.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Thauera*
	Full Scientific Name (LPSN)	Thauera Macy et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %93.765

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Anaerobic sludge from a wastewater treatment plant
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB066262 (>99% sequence identity) for Thauera from Microbeatlas

Aquatic Samples	491
Soil Samples	20
Animal Samples	31
Plant Samples	6
Total Samples	548

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thauera sp. DNT-1 gene for 16S ribosomal RNA	AB066262	1461	ENA	167065 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thauera sp. DNT-1 JCM 12309	GCA_001310835	contig	GenBank	167065 tax ID	*
[Ref.: #66792]	Thauera sp. DNT-1 strain JCM 12309	167065.3	wgs	PATRIC	167065 tax ID	*
[Ref.: #66792]	Thauera sp. JCM 12309	2728369658	draft	JGI IMG/M	167065 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thauera sp. DNT-1 strain JCM 12309 PATRIC: 167065.3
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thauera sp. DNT-1 strain JCM 12309 PATRIC: 167065.3
[Ref.: #69480]	motile	yes	92.063	no
[Ref.: #69480]	gram-positive	no	98.431	no
[Ref.: #69480]	anaerobic	no	88.956	no
[Ref.: #69480]	aerobic	no	57.863	no
[Ref.: #69480]	halophile	no	94.344	no
[Ref.: #69480]	spore-forming	no	94.32	no
[Ref.: #69480]	thermophile	no	93.837	no
[Ref.: #69480]	glucose-util	no	73.98	no
[Ref.: #69480]	flagellated	yes	82.768	no
[Ref.: #69480]	glucose-ferment	no	88.785	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 12309

[Ref.: #113281]

SI-ID 231872

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113281

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID231872.1 )

* These data were automatically processed and therefore are not curated

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Thauera sp. DNT-1 strain JCM 12309

Thauera sp. DNT-1 strain JCM 12309

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