Natronolimnobius baerhuensis (CGMCC 1.3597, JCM 12253)

Name: Natronolimnobius baerhuensis (CGMCC 1.3597, JCM 12253)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161205

Type strain

Culture col. no. CGMCC 1.3597 JCM 12253

NCBI tax ID(s) 1295126 253108

Special Collections JCM

History T. Itoh and P. Zhou IHC-005.

Links

Natronolimnobius baerhuensis JCM 12253 is an archaeon that was isolated from Baerhu Soda Lake in Inner Mongolia Autonomous Region.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 231867

JCM 12253,CGMCC 1.3597

@ref 20215

Last LPSN update 2026-02-09 11:39:05

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natronolimnobius

Species Natronolimnobius baerhuensis

Full scientific name Natronolimnobius baerhuensis Itoh et al. 2005

BacDive ID	Other strains from **Natronolimnobius baerhuensis** (1)	Type strain
161206	N. baerhuensis JCM 12254, CGMCC 1.3598

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.2

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Observation

67770

Observationquinones: MK-8 and MK-8(H₂)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Baerhu Soda Lake in Inner Mongolia Autonomous Region	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB125106 (>99% sequence identity) for Natronolimnobius baerhuensis subclade from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM217713v1 assembly for Natronolimnobius baerhuensis CGMCC 1.3597	contig	GCA_002177135	253108.4	8062633084	253108	77.76
67770	ASM131618v1 assembly for Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597	contig	GCA_001316185	1295126.4	2740891997	1295126

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Natronolimnobius baerhuensis gene for 16S rRNA, partial sequence, strain: IHC-005	AB125106	1435		253108
124043	Natronolimnobius baerhuensis gene for 16S rRNA, complete sequence, strain: JCM 12253.	AB663471	1471		253108

GC content

@ref	GC-content (mol%)	Method
67770	60.1	genome sequence analysis
67770	59.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597
NCBI: GCA_001316185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	90.20	no
125439	motility	BacteriaNetⓘ	yes	62.60	no
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	84.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Cellulose metabolism in halo(natrono)archaea: a comparative genomics study.	Elcheninov AG, Ugolkov YA, Elizarov IM, Klyukina AA, Kublanov IV, Sorokin DY.	Front Microbiol	10.3389/fmicb.2023.1112247	2023
Genetics	Secondary Metabolite Production Potential in a Microbiome of the Freshwater Sponge Spongilla lacustris.	Graffius S, Garzon JFG, Zehl M, Pjevac P, Kirkegaard R, Flieder M, Loy A, Rattei T, Ostrovsky A, Zotchev SB.	Microbiol Spectr	10.1128/spectrum.04353-22	2023
	Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut.	Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.	Microbiome	10.1186/s40168-019-0737-z	2019
Genetics	Draft Genome Sequence of Natronolimnobius baerhuensis CGMCC 1.3597(T), an Aerobic Haloalkaliphilic Archaeon Isolated from a Soda Lake.	Guo X, Liao Z, Yan Y, Holtzapple M, Hu Q, Zhao B	Genome Announc	10.1128/genomeA.00710-17	2017
Phylogeny	Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China.	Itoh T, Yamaguchi T, Zhou P, Takashina T	Extremophiles	10.1007/s00792-004-0426-z	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natronolimnobius baerhuensis (CGMCC 1.3597, JCM 12253)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002177135

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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