Name: Natronolimnobius baerhuensis JCM 12253
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161205

Type strain:

Species: Natronolimnobius baerhuensis

Culture col. no.: JCM 12253, CGMCC 1.3597

Strain history: T. Itoh and P. Zhou IHC-005.

NCBI tax ID(s): 1295126 (strain), 253108 (species)

SI-ID 231867

JCM 12253, CGMCC 1.3597

Special Collections

Other strains from Natronolimnobius baerhuensis

Section

Natronolimnobius baerhuensis JCM 12253 is an archaeon that was isolated from Baerhu Soda Lake in Inner Mongolia Autonomous Region.

16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Natronolimnobius*
	Species	**Natronolimnobius baerhuensis**
	Full Scientific Name (LPSN)	Natronolimnobius baerhuensis Itoh et al. 2005

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8 and MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Baerhu Soda Lake in Inner Mongolia Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB125106 (>99% sequence identity) for Natronolimnobius baerhuensis subclade from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Natronolimnobius baerhuensis gene for 16S rRNA, partial sequence, strain: IHC-005	AB125106	1435	GenBank ENA	253108 tax ID
[Ref.: #124043]	Natronolimnobius baerhuensis gene for 16S rRNA, complete sequence, strain: JCM 12253.	AB663471	1471	GenBank ENA	253108 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597	GCA_001316185	contig	GenBank ENA	1295126 tax ID
[Ref.: #67770]	Natronolimnobius baerhuensis CGMCC 1.3597	GCA_002177135	contig	GenBank ENA	253108 tax ID
[Ref.: #66792]	Natronolimnobius baerhuensis JCM 12253	2740891997	draft	JGI IMG/M	1295126 tax ID	*
[Ref.: #66792]	Natronolimnobius baerhuensis strain CGMCC 1.3597	253108.4	wgs	PATRIC	253108 tax ID	*
[Ref.: #66792]	Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597	1295126.4	wgs	PATRIC	1295126 tax ID	*

[Ref.: #67770]	GC-content	60.1 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	59.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 12253, CGMCC 1.3597

[Ref.: #113275]

SI-ID 231867

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Natronolimnobius baerhuensis CGMCC 1.3597(T), an Aerobic Haloalkaliphilic Archaeon Isolated from a Soda Lake.	Guo X, Liao Z, Yan Y, Holtzapple M, Hu Q, Zhao B	Genome Announc	10.1128/genomeA.00710-17	2017	*
Phylogeny	Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China.	Itoh T, Yamaguchi T, Zhou P, Takashina T	Extremophiles	10.1007/s00792-004-0426-z	2004	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113275

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID231867.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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