Bifidobacterium longum subsp. infantis (CGMCC 1.3006, JCM 11660)

Name: Bifidobacterium longum subsp. infantis (CGMCC 1.3006, JCM 11660)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161180

Type strain

Culture col. no. CGMCC 1.3006 JCM 11660

NCBI tax ID(s) 1682

Special Collections JCM

History JCM <-- AS 1.3006.

Links

Bifidobacterium longum subsp. infantis JCM 11660 is a bacterium of the family Bifidobacteriaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 231944

JCM 11660,AS 1.3006

@ref 20215

Last LPSN update 2026-05-29 08:44:37

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium longum subsp. infantis

Full scientific name Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

Synonyms (1)

Bifidobacterium infantis

BacDive ID	Other strains from **Bifidobacterium longum subsp. infantis** (24)	Type strain
1743	B. longum subsp. infantis S12, DSM 20088, ATCC 15697, NCTC 11817, JCM ... (type strain)
1744	B. longum subsp. infantis S76E, DSM 20090, ATCC 15702, JCM 1272, BCRC ...
1745	B. longum subsp. infantis DSM 20218, ATCC 17930, JCM 1260, BCRC 14661
143274	B. longum subsp. infantis CCUG 18157, LMG 18912
146680	B. longum subsp. infantis CCUG 31778
148902	B. longum subsp. infantis CCUG 36569
151518	B. longum subsp. infantis CCUG 44191
152130	B. longum subsp. infantis CCUG 45868
152264	B. longum subsp. infantis CCUG 46247
152772	B. longum subsp. infantis CCUG 47592
154127	B. longum subsp. infantis CCUG 52484
154128	B. longum subsp. infantis CCUG 52485
154129	B. longum subsp. infantis CCUG 52486
154130	B. longum subsp. infantis CCUG 52487
155385	B. longum subsp. infantis CCUG 57566
159328	B. longum subsp. infantis WCA-178-WT-4B, DSM 107246
161155	B. longum subsp. infantis JCM 11344
161156	B. longum subsp. infantis JCM 11345
161157	B. longum subsp. infantis JCM 11347
161197	B. longum subsp. infantis JCM 1210, ATCC 25962, BCRC 14603, CECT 4552, ...
165449	B. longum subsp. infantis JCM 7007, LMG 18901
165450	B. longum subsp. infantis JCM 7009, LMG 18902
165451	B. longum subsp. infantis JCM 7010
165452	B. longum subsp. infantis JCM 7011

Morphology

Cell morphology

@ref	Motility	Confidence
125438		93

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.266
125439		99.142

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1510203v1 assembly for Bifidobacterium longum subsp. infantis JCM 11660	complete	GCA_015102035	1682.161	1682	95.92

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1510203v1 assembly for Bifidobacterium longum subsp. infantis JCM 11660
BV-BRC: 1682.161

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	61.81	no
125439	gram_stain	BacteriaNetⓘ	negative	85.70	no
125439	spore_formation	BacteriaNetⓘ	no	99.14	no
125439	motility	BacteriaNetⓘ	yes	75.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium longum subsp. infantis JCM 11660
NCBI: GCA_015102035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.28	no
125438	anaerobic	anaerobicⓘ	yes	81.31	no
125438	aerobic	aerobicⓘ	no	91.52	no
125438	spore-forming	spore-formingⓘ	no	90.27	no
125438	thermophilic	thermophileⓘ	no	92.97	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Functional Significance of Probiotic Bacterial Interactions with Milk Fat Globules in a Human Host.	Wasana WP, Waterland M, Everett DW, Thum C.	Microorganisms	10.3390/microorganisms13020223	2025
Genetics	Targeted High-Resolution Taxonomic Identification of Bifidobacterium longum subsp. infantis Using Human Milk Oligosaccharide Metabolizing Genes.	Tso L, Bonham KS, Fishbein A, Rowland S, Klepac-Ceraj V.	Nutrients	10.3390/nu13082833	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium longum subsp. infantis (CGMCC 1.3006, JCM 11660)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015102035

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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