Name: Streptomyces javensis JCM 11446
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161164

Type strain:

Species: Streptomyces javensis

Culture col. no.: JCM 11446, DSM 41764, NBRC 100777, NCIMB 13679

Strain history: NCIMB 13679 <-- M. Goodfellow B22P3.

NCBI tax ID(s): 114698 (species)

SI-ID 50108

DSM 41764, NCIMB 13679, JCM 11446, NBRC 100777

Special Collections

DSMZ
JCM

Section

Streptomyces javensis JCM 11446 is a spore-forming, mesophilic bacterium that was isolated from Non-rhizosphere soil adjacent to a stand of the tropical legume, Paraserianthes falcataria.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces javensis**
	Full Scientific Name (LPSN)	Streptomyces javensis Sembiring et al. 2001

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Non-rhizosphere soil adjacent to a stand of the tropical legume, Paraserianthes falcataria
[Ref.: #67770]	Host species	Paraserianthes falcataria
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yogyakarta
[Ref.: #67770]	Country	Indonesia
[Ref.: #67770]	Country ISO 3 Code	IDN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB249940 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	65
Soil Samples	635
Animal Samples	94
Plant Samples	40
Total Samples	834

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces javensis gene for 16S rRNA, partial sequence, strain: NBRC 100777	AB249940	1482	GenBank ENA	114698 tax ID
[Ref.: #67770]	Streptomyces sp. B22P3 (S26) partial 16S rRNA gene	AJ391833	1471	GenBank ENA	114698 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces javensis DSM 41764	GCA_016103505	contig	GenBank ENA	114698 tax ID	*
[Ref.: #66792]	Streptomyces javensis strain DSM 41764	114698.5	wgs	PATRIC	114698 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces javensis strain DSM 41764 PATRIC: 114698.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces javensis strain DSM 41764 PATRIC: 114698.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	72.968	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.959	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	85.28	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.546	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.429	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 11446, DSM 41764, NBRC 100777, NCIMB 13679

[Ref.: #113243]

SI-ID 50108

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based classification of the Streptomyces violaceusniger clade and description of Streptomyces sabulosicollis sp. nov. from an Indonesian sand dune.	Kusuma AB, Nouioui I, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-021-01564-0	2021	*
Phylogeny	Streptomyces antioxidans sp. nov., a Novel Mangrove Soil Actinobacterium with Antioxidative and Neuroprotective Potentials.	Ser HL, Tan LT, Palanisamy UD, Abd Malek SN, Yin WF, Chan KG, Goh BH, Lee LH	Front Microbiol	10.3389/fmicb.2016.00899	2016	*
Phylogeny	Streptomyces iranensis sp. nov., isolated from soil.	Hamedi J, Mohammadipanah F, Klenk HP, Potter G, Schumann P, Sproer C, von Jan M, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/ijs.0.015339-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113243

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50108.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces javensis strain DSM 41764

Streptomyces javensis strain DSM 41764

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