Bifidobacterium longum subsp. infantis (JCM 11347)

Name: Bifidobacterium longum subsp. infantis (JCM 11347)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161157

Type strain

Culture col. no. JCM 11347

NCBI tax ID(s) 1682

Special Collections JCM

Links

Bifidobacterium longum subsp. infantis JCM 11347 is a mesophilic prokaryote that was isolated from Infant feces.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 231926

JCM 11347

@ref 20215

Last LPSN update 2025-12-16 10:08:40

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium longum subsp. infantis

Full scientific name Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

Synonyms (1)

Bifidobacterium infantis

BacDive ID	Other strains from **Bifidobacterium longum subsp. infantis** (24)	Type strain
1743	B. longum subsp. infantis S12, DSM 20088, ATCC 15697, NCTC 11817, JCM ... (type strain)
1744	B. longum subsp. infantis S76E, DSM 20090, ATCC 15702, JCM 1272, BCRC ...
1745	B. longum subsp. infantis DSM 20218, ATCC 17930, JCM 1260, BCRC 14661
143274	B. longum subsp. infantis CCUG 18157, LMG 18912
146680	B. longum subsp. infantis CCUG 31778
148902	B. longum subsp. infantis CCUG 36569
151518	B. longum subsp. infantis CCUG 44191
152130	B. longum subsp. infantis CCUG 45868
152264	B. longum subsp. infantis CCUG 46247
152772	B. longum subsp. infantis CCUG 47592
154127	B. longum subsp. infantis CCUG 52484
154128	B. longum subsp. infantis CCUG 52485
154129	B. longum subsp. infantis CCUG 52486
154130	B. longum subsp. infantis CCUG 52487
155385	B. longum subsp. infantis CCUG 57566
159328	B. longum subsp. infantis WCA-178-WT-4B, DSM 107246
161155	B. longum subsp. infantis JCM 11344
161156	B. longum subsp. infantis JCM 11345
161180	B. longum subsp. infantis JCM 11660, CGMCC 1.3006
161197	B. longum subsp. infantis JCM 1210, ATCC 25962, BCRC 14603, CECT 4552, ...
165449	B. longum subsp. infantis JCM 7007, LMG 18901
165450	B. longum subsp. infantis JCM 7009, LMG 18902
165451	B. longum subsp. infantis JCM 7010
165452	B. longum subsp. infantis JCM 7011

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	96.8

Spore formation

@ref	Spore formation	Confidence
125439		99

Isolation, sampling and environmental information

Isolation

67770

Sample typeInfant feces

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1510221v1 assembly for Bifidobacterium longum subsp. infantis JCM 11347	complete	GCA_015102215	1682.162	1682	96.81

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium longum subsp. infantis JCM 11347
NCBI: GCA_015102215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	no	53.30	no
125439	gram_stain	BacteriaNetⓘ	negative	85.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium longum subsp. infantis JCM 11347
NCBI: GCA_015102215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.90	no
125438	anaerobic	anaerobicⓘ	yes	82.31	no
125438	aerobic	aerobicⓘ	no	94.21	no
125438	spore-forming	spore-formingⓘ	no	85.95	no
125438	thermophilic	thermophileⓘ	no	93.50	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	A Human Gut Commensal Ferments Cranberry Carbohydrates To Produce Formate.	Ozcan E, Sun J, Rowley DC, Sela DA.	Appl Environ Microbiol	10.1128/aem.01097-17	2017
Metabolism	A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides.	Locascio RG, Ninonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA.	Microb Biotechnol	10.1111/j.1751-7915.2008.00072.x	2009
Metabolism	Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization.	LoCascio RG, Desai P, Sela DA, Weimer B, Mills DA.	Appl Environ Microbiol	10.1128/aem.00675-10	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium longum subsp. infantis (JCM 11347)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015102215

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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