Name: Mogibacterium pumilum JCM 11202
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161132

Type strain:

Species: Mogibacterium pumilum

Culture col. no.: JCM 11202, ATCC 700696

Strain history: F. Nakazawa D2-18.

NCBI tax ID(s): 86332 (species)

SI-ID 87712

ATCC700696, JCM 11202

Section

Mogibacterium pumilum JCM 11202 is an anaerobe, mesophilic bacterium that was isolated from Human periodontal pockets.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	"Mogibacteriaceae"
	Genus	*Mogibacterium*
	Species	**Mogibacterium pumilum**
	Full Scientific Name (LPSN)	Mogibacterium pumilum Nakazawa et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %97.11

[Ref.: #69480]	Motility	no Confidence in %92.714

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.999

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %97

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human periodontal pockets
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mogibacterium pumilum gene for 16S rRNA, partial sequence, strain:ATCC 700696	AB021701	1470	ENA	86332 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mogibacterium pumilum ATCC 700696	GCA_002243385	chromosome	GenBank	86332 tax ID	*
[Ref.: #66792]	Mogibacterium pumilum strain ATCC 700696	86332.3	wgs	PATRIC	86332 tax ID	*

[Ref.: #67770]

GC-content

46 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mogibacterium pumilum ATCC 700696 NCBI: GCA_002243385.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mogibacterium pumilum ATCC 700696 NCBI: GCA_002243385.1
[Ref.: #69480]	flagellated	no	97.155	no
[Ref.: #69480]	gram-positive	yes	70.938	no
[Ref.: #69480]	anaerobic	yes	99.326	no
[Ref.: #69480]	aerobic	no	98.852	no
[Ref.: #69480]	halophile	no	50.517	no
[Ref.: #69480]	spore-forming	no	89.887	no
[Ref.: #69480]	glucose-util	yes	73.178	no
[Ref.: #69480]	thermophile	no	98.894	no
[Ref.: #69480]	glucose-ferment	yes	69.359	no
[Ref.: #69480]	motile	no	89.447	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 11202, ATCC 700696

[Ref.: #113220]

SI-ID 87712

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113220

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87712.1 )

* These data were automatically processed and therefore are not curated

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Mogibacterium pumilum ATCC 700696

Mogibacterium pumilum ATCC 700696

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