Name: Paenibacillus koleovorans JCM 11186
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161131

Type strain:

Species: Paenibacillus koleovorans

Culture col. no.: JCM 11186, BCRC 17342, IAM 14926, KCTC 13912, NBRC 103111

Strain history: M. Takeda TB.

NCBI tax ID(s): 1220568 (strain), 121608 (species)

SI-ID 88306

JCM 11186, IAM 14926, KCTC 13912, NBRC 103111, BCRC 17342, LMG 24777, LMG 24744

Other strains from Paenibacillus koleovorans

P. koleovorans JCM 11185, IAM 14927

Section

Paenibacillus koleovorans JCM 11186 is a spore-forming, mesophilic, motile bacterium that was isolated from Soil.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus koleovorans**
	Full Scientific Name (LPSN)	Paenibacillus koleovorans Takeda et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %93.245

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC107615 (>99% sequence identity) for Paenibacillus koleovorans subclade from Microbeatlas

Aquatic Samples	97
Soil Samples	1173
Animal Samples	48
Plant Samples	111
Total Samples	1429

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus koleovorans gene for 16S ribosomal RNA, partial sequence, strain: JCM 11186	LC107615	1468	ENA	121608 tax ID
[Ref.: #67770]	Paenibacillus koleovorans gene for 16S rRNA, partial sequence, strai: JCM 11186	AB072237	599	ENA	121608 tax ID
[Ref.: #67770]	Paenibacillus sp. TB gene for 16S rRNA, partial sequence	AB041720	1363	ENA	121608 tax ID
[Ref.: #67770]	Paenibacillus koleovorans gene for 16S rRNA, partial sequence, strain: NBRC 103111	AB681949	1471	ENA	121608 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus koleovorans NBRC 103111	GCA_004000845	contig	GenBank	1220568 tax ID
[Ref.: #66792]	Paenibacillus koleovorans NBRC 103111	1220568.3	wgs	PATRIC	1220568 tax ID	*

[Ref.: #67770]

GC-content

54 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus koleovorans NBRC 103111 PATRIC: 1220568.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus koleovorans NBRC 103111 PATRIC: 1220568.3
[Ref.: #69480]	motile	yes	81.151	no
[Ref.: #69480]	gram-positive	yes	79.265	no
[Ref.: #69480]	anaerobic	no	98.727	no
[Ref.: #69480]	aerobic	yes	92.402	no
[Ref.: #69480]	halophile	no	95.544	no
[Ref.: #69480]	spore-forming	yes	95.283	no
[Ref.: #69480]	thermophile	no	97.039	yes
[Ref.: #69480]	glucose-util	yes	91.388	no
[Ref.: #69480]	flagellated	yes	67.046	no
[Ref.: #69480]	glucose-ferment	no	88.803	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 11186, BCRC 17342, IAM 14926, KCTC 13912, NBRC 103111

[Ref.: #113219]

SI-ID 88306

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus koleovorans sp. nov., able to grow on the sheath of Sphaerotilus natans.	Takeda M, Kamagata Y, Shinmaru S, Nishiyama T, Koizumi J	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1597	2002	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113219

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88306.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus koleovorans NBRC 103111

Paenibacillus koleovorans NBRC 103111

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