Name: Natronobacterium nitratireducens JCM 10879
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161079

Type strain:

Species: Natronobacterium nitratireducens

Culture col. no.: JCM 10879, CGMCC 1.1980

Strain history: P. Zhou C231.

NCBI tax ID(s): 1227454 (strain), 130048 (species)

SI-ID 100671

AS 1.1980, JCM 10879

Special Collections

Section

Natronobacterium nitratireducens JCM 10879 is a mesophilic archaeon that was isolated from Clay from Chahannao soda lake.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Natrialbaceae*
	Genus	*Natronobacterium*
	Species	**Natronobacterium nitratireducens**
	Full Scientific Name (LPSN)	Natronobacterium nitratireducens Xin et al. 2001

Synonym

Halobiforma nitratireducens

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Clay from Chahannao soda lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Inner Mongolia
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB045012 (>99% sequence identity) for Halobiforma nitratireducens subclade from Microbeatlas

Aquatic Samples	4
Soil Samples
Animal Samples
Plant Samples
Total Samples	4

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobiforma nitratireducens gene for 16S ribosomal RNA, partial sequence	AB045012	1435	GenBank ENA	130048 tax ID
[Ref.: #124043]	Halobiforma nitratireducens gene for 16S rRNA, complete sequence, strain: JCM 10879.	AB663436	1471	GenBank ENA	130048 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobiforma nitratireducens JCM 10879	GCA_000337895	contig	GenBank ENA	1227454 tax ID
[Ref.: #66792]	Halobiforma nitratireducens JCM 10879	2554235466	draft	JGI IMG/M	1227454 tax ID	*
[Ref.: #66792]	Halobiforma nitratireducens JCM 10879	1227454.3	wgs	PATRIC	1227454 tax ID	*

[Ref.: #67770]

GC-content

63.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10879, CGMCC 1.1980

[Ref.: #113192]

SI-ID 100671

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronobacterium nitratireducens sp. nov., a aloalkaliphilic archaeon isolated from a soda lake in China.	Xin H, Itoh T, Zhou P, Suzuki K, Nakase T	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1825	2001	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113192

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100671.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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