Natronobacterium nitratireducens (CGMCC 1.1980, JCM 10879)

Name: Natronobacterium nitratireducens (CGMCC 1.1980, JCM 10879)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161079

Type strain

Culture col. no. CGMCC 1.1980 JCM 10879

NCBI tax ID(s) 1227454 130048

Special Collections JCM

History P. Zhou C231.

Links

Natronobacterium nitratireducens JCM 10879 is an archaeon that was isolated from Clay from Chahannao soda lake.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 100671

AS 1.1980,JCM 10879

@ref 20215

Last LPSN update 2026-02-09 11:39:03

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natronobacterium

Species Natronobacterium nitratireducens

Full scientific name Natronobacterium nitratireducens Xin et al. 2001

Synonyms (1)

Halobiforma nitratireducens

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	95.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Clay from Chahannao soda lake	Inner Mongolia	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB045012 (>99% sequence identity) for Halobiforma nitratireducens subclade from Microbeatlas

Aquatic Samples	4
Soil Samples
Animal Samples
Plant Samples
Total Samples	4

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM33789v1 assembly for Halobiforma nitratireducens JCM 10879	contig	GCA_000337895	1227454.3	2554235466	1227454	21.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halobiforma nitratireducens gene for 16S ribosomal RNA, partial sequence	AB045012	1435		130048
124043	Halobiforma nitratireducens gene for 16S rRNA, complete sequence, strain: JCM 10879.	AB663436	1471		130048

GC content

@ref	GC-content (mol%)	Method
67770	63.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halobiforma nitratireducens JCM 10879
NCBI: GCA_000337895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.10	no
125439	gram_stain	BacteriaNetⓘ	negative	81.30	no
125439	motility	BacteriaNetⓘ	yes	52.40	no
125439	spore_formation	BacteriaNetⓘ	no	84.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Wide distribution among halophilic archaea of a novel polyhydroxyalkanoate synthase subtype with homology to bacterial type III synthases.	Han J, Hou J, Liu H, Cai S, Feng B, Zhou J, Xiang H.	Appl Environ Microbiol	10.1128/aem.01117-10	2010
Enzymology	Bacterial-like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis.	Orsini SS, James KL, Reyes DJ, Couto-Rodriguez RL, Gulko MK, Witte A, Carroll RK, Rice KC.	Microbiologyopen	10.1002/mbo3.1124	2020
Genetics	Ecological Trait-Based Digital Categorization of Microbial Genomes for Denitrification Potential.	Isokpehi RD, Kim Y, Krejci SE, Trivedi VD.	Microorganisms	10.3390/microorganisms12040791	2024
Metabolism	Dihydroxyacetone metabolism in Haloferax volcanii.	Ouellette M, Makkay AM, Papke RT.	Front Microbiol	10.3389/fmicb.2013.00376	2013
Phylogeny	Natronobacterium nitratireducens sp. nov., a aloalkaliphilic archaeon isolated from a soda lake in China.	Xin H, Itoh T, Zhou P, Suzuki K, Nakase T	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1825	2001

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natronobacterium nitratireducens (CGMCC 1.1980, JCM 10879)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000337895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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