Name: Streptomyces virginiae NA 255-88 (M808)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16106

Type strain:

Species: Streptomyces virginiae

Strain Designation: NA 255-88 (M808)

Culture col. no.: DSM 40094, ATCC 19817, CBS 291.60, CBS 570.68, ETH 14322, IFO 12827, IFO 3729, IMRU 3651, ISP 5094, JCM 4425, NBRC 12827, NBRC 3729, NRRL B-1446, RIA 1097, BCRC 12069, CGMCC 4.1530, KCTC 1747, MTCC 4730, NRRL ISP-5094, VKM Ac-1218

Strain history: KCC S-0425 <-- IFO 12827 <-- SAJ <-- ISP 5094 <-- T. Oliver NA255-B8.

NCBI tax ID(s): 1961 (species)

SI-ID 386959

ATCC 19817, IFO 3729, IFO 12827, NRRL B-1446, DSM 40094, JCM 4425, CCRC 12069, VKM Ac-1218, CBS 291.60, CBS 314.55, AS 4.1530, KCTC 1747, NBRC 12827, NBRC 3729, BCRC 12069, CGMCC 4.1530, CBS 570.68

Other strains from Streptomyces virginiae

S. virginiae DSM 916, JCM 4974, NRRL 3630, UC ...
S. virginiae DSM 40669, IMRU 3652
S. virginiae ST005091(HKI), ChinaN-390,
S. virginiae ST005092(HKI), JA10088, IMET 40273
S. virginiae JCM 4093, IFO 3392, NBRC 3392

Section

Streptomyces virginiae NA 255-88 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces virginiae**
	Full Scientific Name (LPSN)	Streptomyces virginiae Grundy et al. 1952 (Approved Lists 1980)

Synonym

Streptomyces cinnamonensis

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9306]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9306]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9306]	Name of produced compound	actithiazic acid
[Ref.: #9306]	Name of produced compound	cycloserine

	Metabolite production	Metabolite	Production
[Ref.: #67770]		mycobacidin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9306]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Roanoke, VA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence JN201950 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1680
Soil Samples	19336
Animal Samples	1702
Plant Samples	3681
Total Samples	26399

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9306]	Streptomyces virginiae gene for 16S rRNA, partial sequence, strain: NBRC 12827	AB184175	1468	ENA	1961 tax ID
[Ref.: #20218]	Streptomyces virginiae strain CBS314.55 16S ribosomal RNA gene, partial sequence	JN201950	1407	ENA	1961 tax ID	*
[Ref.: #20218]	Streptomyces virginiae DNA for 16S rRNA, strain IFO 12827	D85123	1514	ENA	1961 tax ID	*
[Ref.: #20218]	Streptomyces virginiae DNA for 16S rRNA, strain IFO 3729	D85119	1514	ENA	1961 tax ID	*
[Ref.: #20218]	Streptomyces virginiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4425	D44137	120	ENA	1961 tax ID	*
[Ref.: #20218]	Streptomyces virginiae gene for 16S rRNA, partial sequence, strain: NBRC 3729	AB184797	1464	ENA	1961 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces virginiae NRRL ISP-5094	GCA_000720455	contig	GenBank	1961 tax ID

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GC-content

72.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces virginiae NRRL ISP-5094 NCBI: GCA_000720455.1
[Ref.: #69480]	motile	no	93.584	no
[Ref.: #69480]	flagellated	no	97.601	no
[Ref.: #69480]	gram-positive	yes	87.519	no
[Ref.: #69480]	anaerobic	no	98.943	no
[Ref.: #69480]	halophile	no	95.909	no
[Ref.: #69480]	spore-forming	yes	93.169	no
[Ref.: #69480]	thermophile	no	99.229	no
[Ref.: #69480]	glucose-util	yes	89.793	no
[Ref.: #69480]	aerobic	yes	87.496	no
[Ref.: #69480]	glucose-ferment	no	88.861	no

Availability in culture collections External links

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Culture collection no.

DSM 40094, ATCC 19817, CBS 291.60, CBS 570.68, ETH 14322, IFO 12827, IFO 3729, IMRU 3651, ISP 5094, JCM 4425, NBRC 12827, NBRC 3729, NRRL B-1446, RIA 1097, BCRC 12069, CGMCC 4.1530, KCTC 1747, MTCC 4730, NRRL ISP-5094, VKM Ac-1218

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SI-ID 386959

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification and characterization of an epsilon-poly-L-lysine-degrading enzyme from an epsilon-poly-L-lysine-producing strain of Streptomyces albulus.	Kito M, Takimoto R, Yoshida T, Nagasawa T	Arch Microbiol	10.1007/s00203-002-0459-6	2002	*
Phylogeny	Streptomyces manipurensis sp. nov., a novel actinomycete isolated from a limestone deposit site in Manipur, India.	Nimaichand S, Zhu WY, Yang LL, Ming H, Nie GX, Tang SK, Ningthoujam DS, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9720-4	2012	*

References

#9306

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85172

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID386959.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces virginiae NRRL ISP-5094

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